RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TMEM260Q9NX78 707 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 RRP15Q9Y3B9 282 aaKnown RBP14.09□□□□□ -0.15
LIG1-201ENST00000263274 PLEKHG2Q9H7P9 1386 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 BICDL2A1A5D9 508 aa14.08□□□□□ -0.15
LIG1-201ENST00000263274 TACC1O75410 805 aa14.08□□□□□ -0.15
LIG1-201ENST00000263274 EHBP1Q8NDI1 1231 aa14.08□□□□□ -0.15
LIG1-201ENST00000263274 USP21Q9UK80 565 aa14.08□□□□□ -0.15
LIG1-201ENST00000263274 LOC102724159A0A0B4J2E5 919 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 F8W031 263 aaPredicted RBP14.08□□□□□ -0.16
LIG1-201ENST00000263274 CYTH3O43739 400 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 BAG3O95817 575 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 CCNE1P24864 410 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 TNNI2P48788 182 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 AMPD3Q01432 767 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 PICALMQ13492 652 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 PWP2Q15269 919 aaKnown RBP14.08□□□□□ -0.16
LIG1-201ENST00000263274 FAM114A1Q8IWE2 563 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 FAM71BQ8TC56 605 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 TBCKQ8TEA7 893 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.08□□□□□ -0.16
LIG1-201ENST00000263274 C6orf50Q9HD87 102 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 ROBO1Q9Y6N7 1651 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 EZH2Q15910 746 aaKnown RBP14.08□□□□□ -0.16
LIG1-201ENST00000263274 SV2BQ7L1I2 683 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 GJA10Q969M2 543 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 COA7Q96BR5 231 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 PIGSQ96S52 555 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 UBXN6Q9BZV1 441 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 THAP9Q9H5L6 903 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 GPCPD1Q9NPB8 672 aa14.08□□□□□ -0.16
LIG1-201ENST00000263274 PARP4Q9UKK3 1724 aaKnown RBP14.08□□□□□ -0.16
LIG1-201ENST00000263274 XIRP1Q702N8 1843 aaKnown RBP14.07□□□□□ -0.16
LIG1-201ENST00000263274 GNPATO15228 680 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 NCK2O43639 380 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 PCP11498 1178 aaKnown RBP14.07□□□□□ -0.16
LIG1-201ENST00000263274 GGCXP38435 758 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 EIF4A3P38919 411 aaKnown RBP14.07□□□□□ -0.16
LIG1-201ENST00000263274 TRAPPC11Q7Z392 1133 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 FBXO33Q7Z6M2 555 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 CCDC155Q8N6L0 562 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 TRIM9Q9C026 710 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 MYH6P13533 1939 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 NID2Q14112 1375 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 PDE2AO00408 941 aaPredicted RBP14.07□□□□□ -0.16
LIG1-201ENST00000263274 MAGEA1P43355 309 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 TUBB4BP68371 445 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 ZBED6P86452 979 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 CCDC40Q4G0X9 1142 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 SPTY2D1Q68D10 685 aaPredicted RBP14.07□□□□□ -0.16
LIG1-201ENST00000263274 TTI2Q6NXR4 508 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 C4orf32Q8N8J7 132 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 RRP36Q96EU6 259 aaKnown RBP14.07□□□□□ -0.16
LIG1-201ENST00000263274 EYA3Q99504 573 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 CENPHQ9H3R5 247 aa14.07□□□□□ -0.16
LIG1-201ENST00000263274 AMPD2Q01433 879 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 GRIK5Q16478 980 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 FAM43BQ6ZT52 329 aaPredicted RBP14.06□□□□□ -0.16
LIG1-201ENST00000263274 NELFCDQ8IXH7 590 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 GIMAP8Q8ND71 665 aaPredicted RBP14.06□□□□□ -0.16
LIG1-201ENST00000263274 IFT81Q8WYA0 676 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 DUSP9Q99956 384 aaKnown RBP14.06□□□□□ -0.16
LIG1-201ENST00000263274 POTEMA6NI47 508 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 KLRC4O43908 158 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 MYBL2P10244 700 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 PAFAH1B1P43034 410 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 CACNB1Q02641 598 aaPredicted RBP14.06□□□□□ -0.16
LIG1-201ENST00000263274 RASSF7Q02833 373 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 C12orf60Q5U649 245 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 NFRKBQ6P4R8 1299 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 TPTE2Q6XPS3 522 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 TMC4Q7Z404 712 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 NEK8Q86SG6 692 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 POTEDQ86YR6 584 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 DHTKD1Q96HY7 919 aaPredicted RBP14.06□□□□□ -0.16
LIG1-201ENST00000263274 MAD2L2Q9UI95 211 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 COL1A1P02452 1464 aaPredicted RBP14.06□□□□□ -0.16
LIG1-201ENST00000263274 RHOBTB3O94955 611 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 IVLP07476 585 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 SRGNP10124 158 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 DGKHQ86XP1 1220 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 LRRC15Q8TF66 581 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 NUP58Q9BVL2 599 aa14.06□□□□□ -0.16
LIG1-201ENST00000263274 GOLGA6BA6NDN3 693 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 TRAF5O00463 557 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 MCM3P25205 808 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 KCTD19Q17RG1 926 aaPredicted RBP14.05□□□□□ -0.16
LIG1-201ENST00000263274 TEX11Q8IYF3 940 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 COG1Q8WTW3 980 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 HDAC7Q8WUI4 952 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 SELENOOQ9BVL4 669 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 ANKRD2Q9GZV1 360 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 BARHL2Q9NY43 387 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 PDS5AQ29RF7 1337 aaKnown RBP14.05□□□□□ -0.16
LIG1-201ENST00000263274 STXBP3O00186 592 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 PSMD14O00487 310 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 KRT18P05783 430 aaKnown RBP14.05□□□□□ -0.16
LIG1-201ENST00000263274 TUBBP07437 444 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 GNA11P29992 359 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 EPS15P42566 896 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 SF3B3Q15393 1217 aaKnown RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms