RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 TRIM56Q9BRZ2 755 aaKnown RBP9.54□□□□□ -0.88
PTCD3-201ENST00000254630 PLEKHA4Q9H4M7 779 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 HESX1Q9UBX0 185 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 HYOU1Q9Y4L1 999 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 PTGDRQ13258 359 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 PPP2R5AQ15172 486 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 DALRD3Q5D0E6 543 aaKnown RBP9.54□□□□□ -0.88
PTCD3-201ENST00000254630 GPATCH4Q5T3I0 446 aaKnown RBP9.54□□□□□ -0.88
PTCD3-201ENST00000254630 ATP2A3Q93084 1043 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 USP28Q96RU2 1077 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 METTL14Q9HCE5 456 aaKnown RBP9.54□□□□□ -0.88
PTCD3-201ENST00000254630 PALD1Q9ULE6 856 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 NCAPD2Q15021 1401 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 KRIT1O00522 736 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 PPP6R2O75170 966 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 ARHGEF6Q15052 776 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 EXOC8Q8IYI6 725 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 C17orf53Q8N3J3 647 aaPredicted RBP9.54□□□□□ -0.88
PTCD3-201ENST00000254630 MGARPQ8TDB4 240 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 FOXP1Q9H334 677 aaPredicted RBP9.54□□□□□ -0.88
PTCD3-201ENST00000254630 NPR1P16066 1061 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 ADCY8P40145 1251 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 LCORLQ8N3X6 602 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 COPRSQ9NQ92 184 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 ERVV-1B6SEH8 477 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 THAP12O43422 761 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 RFX6Q8HWS3 928 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 SCYL1Q96KG9 808 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 CNOT6LQ96LI5 555 aaKnown RBP9.54□□□□□ -0.88
PTCD3-201ENST00000254630 CUEDC2Q9H467 287 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 KMT5AQ9NQR1 393 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 TACC3Q9Y6A5 838 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 SYNJ2BP-COX16A0A087WUM0 186 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 A6NJR5 290 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 BBOX1O75936 387 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 NME8Q8N427 588 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 PGBD1Q96JS3 809 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 COX16Q9P0S2 106 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 PCDHA7Q9UN72 937 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 KAZNQ674X7 775 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 DISC1Q9NRI5 854 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 SAR1BQ9Y6B6 198 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 ATP8B3O60423 1300 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 USP17L3A6NCW0 530 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 USP17L4A6NCW7 530 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 XPOTO43592 962 aaKnown RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 SLC16A2P36021 539 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 USP17L1Q7RTZ2 530 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 CACNA2D3Q8IZS8 1091 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 PPP4R1Q8TF05 950 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 ARHGEF2Q92974 986 aaKnown RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 ATP6V0A1Q93050 837 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 CLTCQ00610 1675 aaKnown RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 ATF2P15336 505 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 GUCY2FP51841 1108 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 CYP4A11Q02928 519 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 GRAPQ13588 217 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 PPM1KQ8N3J5 372 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 GRAPLQ8TC17 118 aaPredicted RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 NLRP7Q8WX94 980 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 MCUR1Q96AQ8 359 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 RSRC1Q96IZ7 334 aaKnown RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 PIGSQ96S52 555 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 KIF9Q9HAQ2 790 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 RIC8AQ9NPQ8 531 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 ADD3Q9UEY8 706 aaKnown RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 IPO11Q9UI26 975 aaKnown RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 DBNLQ9UJU6 430 aaKnown RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 MTMR6Q9Y217 621 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 SOS2Q07890 1332 aaPredicted RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 PALLDQ8WX93 1383 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 SPDYE16A6NNV3 312 aaPredicted RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 SPDYE2Q495Y8 402 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 RUNDC3BQ96NL0 473 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 SNX25Q9H3E2 840 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 ARHGAP31Q2M1Z3 1444 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 PSMC2P35998 433 aaKnown RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 SATB1Q01826 763 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 SPATA1Q5VX52 437 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 SDCCAG8Q86SQ7 713 aaPredicted RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 NLRP10Q86W26 655 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 ATG3Q9NT62 314 aa9.53□□□□□ -0.88
PTCD3-201ENST00000254630 FEZ2Q9UHY8 353 aaPredicted RBP9.53□□□□□ -0.88
PTCD3-201ENST00000254630 CAMSAP1Q5T5Y3 1602 aa9.52□□□□□ -0.88
PTCD3-201ENST00000254630 PTPREP23469 700 aa9.52□□□□□ -0.88
PTCD3-201ENST00000254630 ABCD1P33897 745 aa9.52□□□□□ -0.88
PTCD3-201ENST00000254630 GARSP41250 739 aaKnown RBP9.52□□□□□ -0.88
PTCD3-201ENST00000254630 IREB2P48200 963 aaKnown RBP9.52□□□□□ -0.88
PTCD3-201ENST00000254630 OR8K1Q8NGG5 319 aa9.52□□□□□ -0.88
PTCD3-201ENST00000254630 LARP4BQ92615 738 aaKnown RBP9.52□□□□□ -0.88
PTCD3-201ENST00000254630 STAP2Q9UGK3 403 aa9.52□□□□□ -0.88
PTCD3-201ENST00000254630 A6NNZ2 444 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 BTBD18B2RXH4 712 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 SH2B2O14492 632 aaPredicted RBP9.52□□□□□ -0.89
PTCD3-201ENST00000254630 COBLO75128 1261 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 LMNB1P20700 586 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 MECOMQ03112 1051 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 TUBB8Q3ZCM7 444 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 ODR4Q5SWX8 454 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 ANKRD42Q8N9B4 389 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms