RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 CTNNA3Q9UI47 895 aa24.7■■□□□ 1.54
NEDD8-201ENST00000250495 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.69■■□□□ 1.54
NEDD8-201ENST00000250495 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.69■■□□□ 1.54
NEDD8-201ENST00000250495 KDM4AO75164 1064 aa24.69■■□□□ 1.54
NEDD8-201ENST00000250495 CD4P01730 458 aa24.69■■□□□ 1.54
NEDD8-201ENST00000250495 CALML3P27482 149 aa24.69■■□□□ 1.54
NEDD8-201ENST00000250495 ITGA7Q13683 1181 aa24.69■■□□□ 1.54
NEDD8-201ENST00000250495 DUSP28Q4G0W2 176 aa24.69■■□□□ 1.54
NEDD8-201ENST00000250495 IMMTQ16891 758 aaKnown RBP24.68■■□□□ 1.54
NEDD8-201ENST00000250495 PNMA1Q8ND90 353 aa24.68■■□□□ 1.54
NEDD8-201ENST00000250495 ANKS1AQ92625 1134 aa24.68■■□□□ 1.54
NEDD8-201ENST00000250495 CDX2Q99626 313 aaPredicted RBP24.68■■□□□ 1.54
NEDD8-201ENST00000250495 WDR11Q9BZH6 1224 aa24.68■■□□□ 1.54
NEDD8-201ENST00000250495 KAT14Q9H8E8 782 aa24.68■■□□□ 1.54
NEDD8-201ENST00000250495 LCTP09848 1927 aa24.68■■□□□ 1.54
NEDD8-201ENST00000250495 TMEM265A0A087WTH1 108 aa24.67■■□□□ 1.54
NEDD8-201ENST00000250495 B4DLN1 442 aa24.67■■□□□ 1.54
NEDD8-201ENST00000250495 GOLGA8HP0CJ92 632 aa24.67■■□□□ 1.54
NEDD8-201ENST00000250495 MRPL12P52815 198 aaKnown RBP24.67■■□□□ 1.54
NEDD8-201ENST00000250495 RPS6P62753 249 aaKnown RBP24.67■■□□□ 1.54
NEDD8-201ENST00000250495 RGS22Q8NE09 1264 aa24.67■■□□□ 1.54
NEDD8-201ENST00000250495 DNERQ8NFT8 737 aa24.67■■□□□ 1.54
NEDD8-201ENST00000250495 ZSCAN10Q96SZ4 725 aaPredicted RBP24.67■■□□□ 1.54
NEDD8-201ENST00000250495 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.67■■□□□ 1.545e-9■□□□□ 8.6
NEDD8-201ENST00000250495 PPP1R12CQ9BZL4 782 aa24.67■■□□□ 1.54
NEDD8-201ENST00000250495 RBM47A0AV96 593 aaKnown RBP24.66■■□□□ 1.54
NEDD8-201ENST00000250495 PDE4DQ08499 809 aa24.66■■□□□ 1.54
NEDD8-201ENST00000250495 TMEM63BQ5T3F8 832 aa24.66■■□□□ 1.54
NEDD8-201ENST00000250495 SLC30A10Q6XR72 485 aa24.66■■□□□ 1.54
NEDD8-201ENST00000250495 KRT23Q9C075 422 aa24.66■■□□□ 1.54
NEDD8-201ENST00000250495 UBA5Q9GZZ9 404 aa24.66■■□□□ 1.54
NEDD8-201ENST00000250495 MAF1Q9H063 256 aa24.66■■□□□ 1.54
NEDD8-201ENST00000250495 LRRC37A2A6NM11 1700 aa24.66■■□□□ 1.54
NEDD8-201ENST00000250495 B4E1Z4 1266 aa24.65■■□□□ 1.54
NEDD8-201ENST00000250495 CSF2RAP15509 400 aa24.65■■□□□ 1.54
NEDD8-201ENST00000250495 PTGS1P23219 599 aa24.65■■□□□ 1.54
NEDD8-201ENST00000250495 TMEM240Q5SV17 173 aa24.65■■□□□ 1.54
NEDD8-201ENST00000250495 C16orf59Q7L2K0 433 aa24.65■■□□□ 1.54
NEDD8-201ENST00000250495 TTYH1Q9H313 450 aaPredicted RBP24.65■■□□□ 1.54
NEDD8-201ENST00000250495 POLR3EQ9NVU0 708 aa24.65■■□□□ 1.54
NEDD8-201ENST00000250495 ZSWIM5Q9P217 1185 aa24.65■■□□□ 1.54
NEDD8-201ENST00000250495 GRIN2DO15399 1336 aa24.64■■□□□ 1.54
NEDD8-201ENST00000250495 CPT1AP50416 773 aa24.64■■□□□ 1.54
NEDD8-201ENST00000250495 USH1GQ495M9 461 aa24.64■■□□□ 1.54
NEDD8-201ENST00000250495 PSRC1Q6PGN9 363 aaPredicted RBP24.64■■□□□ 1.54
NEDD8-201ENST00000250495 CNNM2Q9H8M5 875 aa24.64■■□□□ 1.54
NEDD8-201ENST00000250495 LAMA2P24043 3122 aaKnown RBP24.64■■□□□ 1.53
NEDD8-201ENST00000250495 NKRFO15226 690 aaKnown RBP eCLIP24.63■■□□□ 1.53
NEDD8-201ENST00000250495 CYP2C18P33260 490 aa24.63■■□□□ 1.53
NEDD8-201ENST00000250495 ASPRV1Q53RT3 343 aa24.63■■□□□ 1.53
NEDD8-201ENST00000250495 BRDTQ58F21 947 aaPredicted RBP24.63■■□□□ 1.53
NEDD8-201ENST00000250495 CPVLQ9H3G5 476 aa24.63■■□□□ 1.53
NEDD8-201ENST00000250495 HIPK3Q9H422 1215 aa24.63■■□□□ 1.53
NEDD8-201ENST00000250495 LAMA4Q16363 1823 aa24.63■■□□□ 1.53
NEDD8-201ENST00000250495 EDNRBP24530 442 aa24.62■■□□□ 1.53
NEDD8-201ENST00000250495 PSMC6P62333 389 aa24.62■■□□□ 1.53
NEDD8-201ENST00000250495 CDC37Q16543 378 aaPredicted RBP24.62■■□□□ 1.53
NEDD8-201ENST00000250495 ZNF365Q70YC5 407 aa24.62■■□□□ 1.53
NEDD8-201ENST00000250495 ADGRF4Q8IZF3 695 aa24.62■■□□□ 1.53
NEDD8-201ENST00000250495 ENAHQ8N8S7 591 aaPredicted RBP24.62■■□□□ 1.53
NEDD8-201ENST00000250495 OR6J1Q8NGC5 347 aa24.62■■□□□ 1.53
NEDD8-201ENST00000250495 SCFD2Q8WU76 684 aa24.62■■□□□ 1.53
NEDD8-201ENST00000250495 IL23AQ9NPF7 189 aa24.62■■□□□ 1.53
NEDD8-201ENST00000250495 GPHNQ9NQX3 736 aaPredicted RBP24.62■■□□□ 1.53
NEDD8-201ENST00000250495 SUPT16HQ9Y5B9 1047 aaKnown RBP24.62■■□□□ 1.53
NEDD8-201ENST00000250495 TNKSO95271 1327 aa24.61■■□□□ 1.53
NEDD8-201ENST00000250495 ABCB11O95342 1321 aa24.61■■□□□ 1.53
NEDD8-201ENST00000250495 PARP1P09874 1014 aaKnown RBP24.61■■□□□ 1.53
NEDD8-201ENST00000250495 ACRP10323 421 aa24.61■■□□□ 1.53
NEDD8-201ENST00000250495 PPP2R5BQ15173 497 aa24.61■■□□□ 1.53
NEDD8-201ENST00000250495 UBAC1Q9BSL1 405 aa24.61■■□□□ 1.53
NEDD8-201ENST00000250495 TRPV6Q9H1D0 765 aa24.61■■□□□ 1.53
NEDD8-201ENST00000250495 RAD50Q92878 1312 aa24.61■■□□□ 1.53
NEDD8-201ENST00000250495 B4GALT4O60513 344 aa24.6■■□□□ 1.53
NEDD8-201ENST00000250495 SUPT20HL2P0C7V6 817 aa24.6■■□□□ 1.53
NEDD8-201ENST00000250495 DNAJB2P25686 324 aa24.6■■□□□ 1.53
NEDD8-201ENST00000250495 RASIP1Q5U651 963 aa24.6■■□□□ 1.53
NEDD8-201ENST00000250495 MCF2L2Q86YR7 1114 aa24.6■■□□□ 1.53
NEDD8-201ENST00000250495 MYLIPQ8WY64 445 aa24.6■■□□□ 1.53
NEDD8-201ENST00000250495 MTG1Q9BT17 334 aaPredicted RBP24.6■■□□□ 1.53
NEDD8-201ENST00000250495 DHX16O60231 1041 aaKnown RBP24.59■■□□□ 1.53
NEDD8-201ENST00000250495 KPNA6O60684 536 aa24.59■■□□□ 1.53
NEDD8-201ENST00000250495 FGBP02675 491 aa24.59■■□□□ 1.53
NEDD8-201ENST00000250495 MYL3P08590 195 aa24.59■■□□□ 1.53
NEDD8-201ENST00000250495 PURAQ00577 322 aaKnown RBP24.59■■□□□ 1.53
NEDD8-201ENST00000250495 TTLL4Q14679 1199 aa24.59■■□□□ 1.53
NEDD8-201ENST00000250495 PHF6Q8IWS0 365 aaKnown RBP eCLIP24.59■■□□□ 1.53
NEDD8-201ENST00000250495 NOC4LQ9BVI4 516 aaKnown RBP24.59■■□□□ 1.53
NEDD8-201ENST00000250495 ALDH8A1Q9H2A2 487 aaPredicted RBP24.59■■□□□ 1.53
NEDD8-201ENST00000250495 MTIF3Q9H2K0 278 aaKnown RBP24.59■■□□□ 1.53
NEDD8-201ENST00000250495 MRPL11Q9Y3B7 192 aaKnown RBP24.59■■□□□ 1.53
NEDD8-201ENST00000250495 TXNP10599 105 aaKnown RBP24.58■■□□□ 1.53
NEDD8-201ENST00000250495 IFIT1BQ5T764 474 aaKnown RBP24.58■■□□□ 1.53
NEDD8-201ENST00000250495 TTC22Q5TAA0 569 aa24.58■■□□□ 1.53
NEDD8-201ENST00000250495 RPUSD2Q8IZ73 545 aaKnown RBP24.58■■□□□ 1.53
NEDD8-201ENST00000250495 MAFAQ8NHW3 353 aaPredicted RBP24.58■■□□□ 1.53
NEDD8-201ENST00000250495 RUFY2Q8WXA3 655 aa24.58■■□□□ 1.53
NEDD8-201ENST00000250495 HERVK_113Q902F9 699 aa24.58■■□□□ 1.53
NEDD8-201ENST00000250495 TIFAQ96CG3 184 aa24.58■■□□□ 1.53
NEDD8-201ENST00000250495 VAT1LQ9HCJ6 419 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms