RNA–Protein interactions for RNA: YDR379C-A

SDH6, Transcript of Mitochondrial protein involved in assembly of succinate dehydrogenase, yeast

Gene SDH6, Length 240 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SDH6	YDR379C-A	CAF40	P53829	373 aa		0.61	□□□□□ -2.31
SDH6	YDR379C-A	IRC15	Q02733	499 aa		0.61	□□□□□ -2.31
SDH6	YDR379C-A	TY2A-DR2	Q03483	438 aa		0.61	□□□□□ -2.31
SDH6	YDR379C-A	VPS74	Q06385	345 aa		0.61	□□□□□ -2.31
SDH6	YDR379C-A	RPS10A	Q08745	105 aa	Predicted RBP	0.61	□□□□□ -2.31
SDH6	YDR379C-A	TY2A-B	Q12260	438 aa		0.61	□□□□□ -2.31
SDH6	YDR379C-A	TY2A-OR2	Q12293	438 aa		0.61	□□□□□ -2.31
SDH6	YDR379C-A	TY2A-DR1	Q12392	438 aa		0.61	□□□□□ -2.31
SDH6	YDR379C-A	TY2A-OR1	Q12439	438 aa		0.61	□□□□□ -2.31
SDH6	YDR379C-A	ERG27	Q12452	347 aa	Known RBP	0.61	□□□□□ -2.31
SDH6	YDR379C-A	TY2A-DR3	Q99303	438 aa		0.61	□□□□□ -2.31
SDH6	YDR379C-A	VCX1	Q99385	411 aa		0.61	□□□□□ -2.31
SDH6	YDR379C-A	CHS1	P08004	1131 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	PRB1	P09232	635 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	PEP5	P12868	1029 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	HSP26	P15992	214 aa	Known RBP RIP-Chip data	0.6	□□□□□ -2.31	not detected
SDH6	YDR379C-A	CPR4	P25334	318 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	GRX4	P32642	244 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	FRE1	P32791	686 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	MTR2	P34232	184 aa	Known RBP	0.6	□□□□□ -2.31
SDH6	YDR379C-A	MRPL36	P36531	177 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	PIM1	P36775	1133 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	KTR3	P38130	404 aa	Predicted RBP	0.6	□□□□□ -2.31
SDH6	YDR379C-A	ELO1	P39540	310 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	PUG1	P40100	303 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	PFK26	P40433	827 aa	Known RBP	0.6	□□□□□ -2.31
SDH6	YDR379C-A	ELP2	P42935	788 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	YJR154W	P47181	346 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	COG1	P53079	417 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	YNR061C	P53747	219 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	RSM23	Q01163	450 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	SHR3	Q02774	210 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	INA17	Q02888	182 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	SLD5	Q03406	294 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	RSN1	Q03516	953 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	TSR1	Q07381	788 aa	Known RBP	0.6	□□□□□ -2.31
SDH6	YDR379C-A	PRM7	Q12459	698 aa		0.6	□□□□□ -2.31
SDH6	YDR379C-A	YBR085C-A	O43137	85 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	EXO70	P19658	623 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	BUD5	P25300	642 aa	Predicted RBP	0.59	□□□□□ -2.31
SDH6	YDR379C-A	UTR4	P32626	227 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	YKL100C	P34248	587 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	YKL133C	P36066	463 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	YKL023W	P36103	277 aa	Known RBP	0.59	□□□□□ -2.31
SDH6	YDR379C-A	YNG2	P38806	282 aa	Known RBP	0.59	□□□□□ -2.31
SDH6	YDR379C-A	VPS27	P40343	622 aa	Known RBP	0.59	□□□□□ -2.31
SDH6	YDR379C-A	PAN6	P40459	309 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	SEC24	P40482	926 aa	Known RBP	0.59	□□□□□ -2.31
SDH6	YDR379C-A	IST3	P40565	148 aa	Predicted RBP	0.59	□□□□□ -2.31
SDH6	YDR379C-A	IME4	P41833	600 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	GWT1	P47026	490 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	TOF1	P53840	1238 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	DUG3	P53871	357 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	IBD2	P53892	351 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	TGL2	P54857	326 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	PIR3	Q03180	325 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	IVY1	Q04934	453 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	HRI1	Q05905	244 aa	Known RBP	0.59	□□□□□ -2.31
SDH6	YDR379C-A	ECM30	Q06673	1274 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	THP3	Q12049	470 aa	Known RBP	0.59	□□□□□ -2.31
SDH6	YDR379C-A	LEU9	Q12166	604 aa	Known RBP	0.59	□□□□□ -2.31
SDH6	YDR379C-A	LSP1	Q12230	341 aa	Known RBP	0.59	□□□□□ -2.31
SDH6	YDR379C-A	COX17	Q12287	69 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	YOR019W	Q99248	730 aa		0.59	□□□□□ -2.31
SDH6	YDR379C-A	TPK1	P06244	397 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	MSS18	P08593	268 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	PFK2	P16862	959 aa	Known RBP RIP-Chip data	0.58	□□□□□ -2.32	not detected
SDH6	YDR379C-A	ERG8	P24521	451 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	DAL2	P25335	343 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	YCL049C	P25577	312 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	PDB1	P32473	366 aa	Known RBP	0.58	□□□□□ -2.32
SDH6	YDR379C-A	NAT2	P37293	288 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	RCK2	P38623	610 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	VPS4	P52917	437 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	TAN1	P53072	289 aa	Predicted RBP	0.58	□□□□□ -2.32
SDH6	YDR379C-A	BUD32	P53323	261 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	DOS2	P54858	310 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	MUB1	Q03162	620 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	RTT109	Q07794	436 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	PSK2	Q08217	1101 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	FDH1	Q08911	376 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	YLR108C	Q12259	485 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	PCD1	Q12524	340 aa		0.58	□□□□□ -2.32
SDH6	YDR379C-A	SUC2	P00724	532 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	APA1	P16550	321 aa	Known RBP	0.57	□□□□□ -2.32
SDH6	YDR379C-A	SUI2	P20459	304 aa	Known RBP	0.57	□□□□□ -2.32
SDH6	YDR379C-A	ADH7	P25377	361 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	CRM1	P30822	1084 aa	Known RBP	0.57	□□□□□ -2.32
SDH6	YDR379C-A	KKQ8	P36004	724 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	CHK1	P38147	527 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	MIX23	P38162	196 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	YHR210C	P38893	341 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	BUR6	P40096	142 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	FAU1	P40099	211 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	SLZ1	P40167	298 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	PSF2	P40359	213 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	HIS6	P40545	261 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	CHS6	P40955	746 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	GCD10	P41814	478 aa		0.57	□□□□□ -2.32
SDH6	YDR379C-A	RRT5	P43607	289 aa		0.57	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms