RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 FAN1Q9Y2M0 1017 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 KDM6BO15054 1643 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 TMEM232C9JQI7 657 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 TFRCP02786 760 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 SERPINB2P05120 415 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 PSAPP07602 524 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 BTDP43251 543 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 CYP2J2P51589 502 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 KPNA2P52292 529 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 HHATQ5VTY9 493 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 PATL1Q86TB9 770 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ZNF713Q8N859 430 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 MASTLQ96GX5 879 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 TRAIPQ9BWF2 469 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ZFYVE28Q9HCC9 887 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 PA2G4Q9UQ80 394 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 CLCA2Q9UQC9 943 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 HYOU1Q9Y4L1 999 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 LOC102724428A0A0B4J2F2 783 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 TLDC2A0PJX2 215 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 NPM3O75607 178 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 SIK1P57059 783 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 KHDRBS2Q5VWX1 349 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 TTC23LQ6PF05 361 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 RAPH1Q70E73 1250 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 SEPT12Q8IYM1 358 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 PI4K2BQ8TCG2 481 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ZNF577Q9BSK1 485 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 AAASQ9NRG9 546 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 SYNRGQ9UMZ2 1314 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ASPRV1Q53RT3 343 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 LRCH2Q5VUJ6 765 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 GPBP1Q86WP2 473 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 GBP7Q8N8V2 638 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 NECAB1Q8N987 351 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ZC3H15Q8WU90 426 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 DPF3Q92784 378 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 FBXO40Q9UH90 709 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 PI4K2BG5E9Z4 385 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ADCY5O95622 1261 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 PAK1Q13153 545 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 CCDC105Q8IYK2 499 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 MRRFQ96E11 262 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 RPF1Q9H9Y2 349 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 TSHZ2Q9NRE2 1034 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 TEKT2Q9UIF3 430 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 TSKSQ9UJT2 592 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ATP7AQ04656 1500 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 SLC4A1P02730 911 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 CCDC84Q86UT8 332 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 MTRQ99707 1265 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 LLPHQ9BRT6 129 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 MYO1AQ9UBC5 1043 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 HNRNPDLO14979 420 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 BNIP3LO60238 219 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 MCM4P33991 863 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ARL4AP40617 200 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ASPHQ12797 758 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 NOLC1Q14978 699 aaKnown RBP eCLIP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 TNNI3KQ59H18 835 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 SLFN13Q68D06 897 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ZSWIM4Q9H7M6 989 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 PCDHB4Q9Y5E5 795 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 AKR1B15C9JRZ8 316 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 STAT1P42224 750 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 RNASE9P60153 205 aaKnown RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 KIAA1755Q5JYT7 1200 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 SFMBT2Q5VUG0 894 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ESYT1Q9BSJ8 1104 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 AMNQ9BXJ7 453 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 COL4A3BPQ9Y5P4 624 aa6.69□□□□□ -1.34
SCN1A-217ENST00000637988 ZNF532Q9HCE3 1301 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 USP17L8P0C7I0 530 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 RAD51AP2Q09MP3 1159 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 CEP57Q86XR8 500 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 MAP10Q9P2G4 905 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 PAMP19021 973 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 SOX5P35711 763 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 MEI1Q5TIA1 1274 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 FRA10AC1Q70Z53 315 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 CABP7Q86V35 215 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 AOPEPQ8N6M6 819 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 ZBTB38Q8NAP3 1195 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-217ENST00000637988 MCUR1Q96AQ8 359 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 CENPKQ9BS16 269 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 RAB17Q9H0T7 212 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 TYW1Q9NV66 732 aaKnown RBP6.68□□□□□ -1.34
SCN1A-217ENST00000637988 PI4KBQ9UBF8 816 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 MAP3K15Q6ZN16 1313 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 PDE1AP54750 535 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 STX17P56962 302 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 TTLL4Q14679 1199 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 PPP2R5EQ16537 467 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 SLC27A3Q5K4L6 730 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 HAUS6Q7Z4H7 955 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 SRRM1Q8IYB3 904 aaKnown RBP6.68□□□□□ -1.34
SCN1A-217ENST00000637988 TRIM11Q96F44 468 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 MMP19Q99542 508 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms