RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 ASPRV1Q53RT3 343 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 SOGA3Q5TF21 947 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 CDAN1Q8IWY9 1227 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 ADGRF4Q8IZF3 695 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 TMEM260Q9NX78 707 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 CASP1P29466 404 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 SSR1P43307 286 aaKnown RBP13.01□□□□□ -0.33
CLN6-217ENST00000636964 AFMP43652 599 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 NLRP12P59046 1061 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 CXCL9Q07325 125 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 ZMYND12Q9H0C1 365 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 ZNRF3Q9ULT6 936 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 FHOD1Q9Y613 1164 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 USP17L10C9JJH3 530 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 SNHG28P0DPA3 235 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 DALRD3Q5D0E6 543 aaKnown RBP13.01□□□□□ -0.33
CLN6-217ENST00000636964 SIAH1Q8IUQ4 282 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 DRC7Q8IY82 874 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 STAMQ92783 540 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 GMLQ99445 158 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 JMJD4Q9H9V9 463 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 TMOD2Q9NZR1 351 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 ZNF70Q9UC06 446 aaPredicted RBP13.01□□□□□ -0.33
CLN6-217ENST00000636964 MYO3BQ8WXR4 1341 aa13.01□□□□□ -0.33
CLN6-217ENST00000636964 CAVIN2O95810 425 aa13□□□□□ -0.33
CLN6-217ENST00000636964 GH2P01242 217 aa13□□□□□ -0.33
CLN6-217ENST00000636964 MDM2Q00987 491 aaPredicted RBP13□□□□□ -0.33
CLN6-217ENST00000636964 ABCB5Q2M3G0 1257 aa13□□□□□ -0.33
CLN6-217ENST00000636964 FERMT2Q96AC1 680 aa13□□□□□ -0.33
CLN6-217ENST00000636964 NUP88Q99567 741 aaPredicted RBP13□□□□□ -0.33
CLN6-217ENST00000636964 NAT10Q9H0A0 1025 aaKnown RBP13□□□□□ -0.33
CLN6-217ENST00000636964 TMEM60Q9H2L4 133 aa13□□□□□ -0.33
CLN6-217ENST00000636964 C6orf50Q9HD87 102 aa13□□□□□ -0.33
CLN6-217ENST00000636964 HDAC9Q9UKV0 1011 aa13□□□□□ -0.33
CLN6-217ENST00000636964 BCS1LQ9Y276 419 aa13□□□□□ -0.33
CLN6-217ENST00000636964 PSDA5PKW4 1024 aaPredicted RBP13□□□□□ -0.33
CLN6-217ENST00000636964 TRAPPC10P48553 1259 aa13□□□□□ -0.33
CLN6-217ENST00000636964 ICA1Q05084 483 aa13□□□□□ -0.33
CLN6-217ENST00000636964 LETM2Q2VYF4 491 aa13□□□□□ -0.33
CLN6-217ENST00000636964 RBM26Q5T8P6 1007 aaKnown RBP13□□□□□ -0.33
CLN6-217ENST00000636964 TATDN1Q6P1N9 297 aa13□□□□□ -0.33
CLN6-217ENST00000636964 ARMCX6Q7L4S7 300 aa13□□□□□ -0.33
CLN6-217ENST00000636964 CALCOCO1Q9P1Z2 691 aa13□□□□□ -0.33
CLN6-217ENST00000636964 TUBE1Q9UJT0 475 aa13□□□□□ -0.33
CLN6-217ENST00000636964 SIPA1L1O43166 1804 aa13□□□□□ -0.33
CLN6-217ENST00000636964 BMP15O95972 392 aa13□□□□□ -0.33
CLN6-217ENST00000636964 SNAP25P60880 206 aa13□□□□□ -0.33
CLN6-217ENST00000636964 TGFB2P61812 414 aa13□□□□□ -0.33
CLN6-217ENST00000636964 RAD51AP2Q09MP3 1159 aa13□□□□□ -0.33
CLN6-217ENST00000636964 POSTNQ15063 836 aa13□□□□□ -0.33
CLN6-217ENST00000636964 MIGA2Q7L4E1 593 aa13□□□□□ -0.33
CLN6-217ENST00000636964 KANSL2Q9H9L4 492 aa13□□□□□ -0.33
CLN6-217ENST00000636964 ZKSCAN7Q9P0L1 754 aaPredicted RBP13□□□□□ -0.33
CLN6-217ENST00000636964 ACTN4O43707 911 aaKnown RBP12.99□□□□□ -0.33
CLN6-217ENST00000636964 PPP1R11O60927 126 aaPredicted RBP12.99□□□□□ -0.33
CLN6-217ENST00000636964 ENTPD3O75355 529 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 SLC1A4P43007 532 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 C4orf32Q8N8J7 132 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 DAGLBQ8NCG7 672 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 CCDC12Q8WUD4 166 aaPredicted RBP12.99□□□□□ -0.33
CLN6-217ENST00000636964 MTFR1LQ9H019 292 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLN6-217ENST00000636964 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.99□□□□□ -0.33
CLN6-217ENST00000636964 CCDC172P0C7W6 258 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 H2AFXP16104 143 aaPredicted RBP12.99□□□□□ -0.33
CLN6-217ENST00000636964 SMARCA1P28370 1054 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 GNA11P29992 359 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 PLA2G4AP47712 749 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 SLFN13Q68D06 897 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 TMEM39BQ9GZU3 492 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 MYH4Q9Y623 1939 aa12.99□□□□□ -0.33
CLN6-217ENST00000636964 CCNT1O60563 726 aaKnown RBP12.98□□□□□ -0.33
CLN6-217ENST00000636964 BMP6P22004 513 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 GALNT17Q6IS24 598 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 LRRC8AQ8IWT6 810 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 SPICE1Q8N0Z3 855 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 OTUD6BQ8N6M0 293 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 TSPYL1Q9H0U9 437 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 TAOK3Q9H2K8 898 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 PP2D1A8MPX8 630 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 GTF2A1P52655 376 aaPredicted RBP12.98□□□□□ -0.33
CLN6-217ENST00000636964 TBCKQ8TEA7 893 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 JDP2Q8WYK2 163 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 EFCC1Q9HA90 598 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 F5H6K3 240 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 NPM3O75607 178 aaKnown RBP12.98□□□□□ -0.33
CLN6-217ENST00000636964 KLRC3Q07444 240 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 NONOQ15233 471 aaKnown RBP eCLIP12.98□□□□□ -0.332e-6■■■□□ 16.1
CLN6-217ENST00000636964 UBE2SQ16763 222 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 TMEM179Q6ZVK1 233 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 REXO1Q8N1G1 1221 aaKnown RBP12.98□□□□□ -0.33
CLN6-217ENST00000636964 PLIN2Q99541 437 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 NYAP2Q9P242 653 aa12.98□□□□□ -0.33
CLN6-217ENST00000636964 PNMA6FA0A0J9YX94 578 aa12.97□□□□□ -0.33
CLN6-217ENST00000636964 CCZ1BP86790 482 aa12.97□□□□□ -0.33
CLN6-217ENST00000636964 CCZ1P86791 482 aaPredicted RBP12.97□□□□□ -0.33
CLN6-217ENST00000636964 GPATCH4Q5T3I0 446 aaKnown RBP12.97□□□□□ -0.33
CLN6-217ENST00000636964 CALR3Q96L12 384 aaKnown RBP12.97□□□□□ -0.33
CLN6-217ENST00000636964 MAN1B1Q9UKM7 699 aa12.97□□□□□ -0.33
CLN6-217ENST00000636964 IKQ13123 557 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms