RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 GUCY1B3Q02153 619 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 IFI16Q16666 785 aaKnown RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 SH2D4BQ5SQS7 431 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ZMYM1Q5SVZ6 1142 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ZNF365Q70YC5 407 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 TRAPPC11Q7Z392 1133 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ZIM3Q96PE6 472 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 UBE2OQ9C0C9 1292 aaKnown RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 JADE2Q9NQC1 790 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 SPATA7Q9P0W8 599 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ATXN10Q9UBB4 475 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 PA2G4Q9UQ80 394 aaKnown RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 UBN2Q6ZU65 1347 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 MYH3P11055 1940 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 SPTLC2O15270 562 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 HIP1RO75146 1068 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ANXA1P04083 346 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 A1BGP04217 495 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 VIL1P09327 827 aaKnown RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ZNF24P17028 368 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 PAK2Q13177 524 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 TMED1Q13445 227 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 EPHA10Q5JZY3 1008 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 FBF1Q8TES7 1133 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 JAKMIP2Q96AA8 810 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 DDX27Q96GQ7 796 aaKnown RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 CCDC43Q96MW1 224 aaKnown RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ECHDC1Q9NTX5 307 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 TMOD4Q9NZQ9 345 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 LEMD3Q9Y2U8 911 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 CYP27B1O15528 508 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 PDHA1P08559 390 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 CCDC15Q0P6D6 951 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 MAP3K12Q12852 859 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 NMIQ13287 307 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-213ENST00000636759 FKBP15Q5T1M5 1219 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 SFMBT2Q5VUG0 894 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 LMOD2Q6P5Q4 547 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 ZNF790Q6PG37 636 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 CACNA2D4Q7Z3S7 1137 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 ILDR1Q86SU0 546 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-213ENST00000636759 CCDC197Q8NCU1 140 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 CABLES1Q8TDN4 633 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 L3MBTL3Q96JM7 780 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-213ENST00000636759 ATP6V1G3Q96LB4 118 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 AGXT2Q9BYV1 514 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 PIDD1Q9HB75 910 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 INTS13Q9NVM9 706 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 NUB1Q9Y5A7 615 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 COL16A1Q07092 1604 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-213ENST00000636759 SRGAP2O75044 1071 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 TMCC1O94876 653 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 TRIM37O94972 964 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 CHGBP05060 677 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 MATR3P43243 847 aaKnown RBP eCLIP7.55□□□□□ -1.2
SCN1A-213ENST00000636759 SESN3P58005 492 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 SPRED3Q2MJR0 410 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 TSR1Q2NL82 804 aaKnown RBP7.55□□□□□ -1.2
SCN1A-213ENST00000636759 CNBD1Q8NA66 436 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 CCDC51Q96ER9 411 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 SLF1Q9BQI6 1058 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 HSD3B7Q9H2F3 369 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 RHBDL2Q9NX52 303 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 CWC25Q9NXE8 425 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-213ENST00000636759 WWC3Q9ULE0 1092 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 LRP5O75197 1615 aa7.55□□□□□ -1.2
SCN1A-213ENST00000636759 COL14A1Q05707 1796 aaKnown RBP7.55□□□□□ -1.2
SCN1A-213ENST00000636759 AHDC1Q5TGY3 1603 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 SPDYE5A6NIY4 337 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 GSTA1P08263 222 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 TATP17735 454 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 EIF4BP23588 611 aaKnown RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 GNAQP50148 359 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 NLRP5P59047 1200 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 KLC1Q07866 573 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 RBL2Q08999 1139 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 C2orf54Q08AI8 447 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 TSNAXIP1Q2TAA8 658 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 KBTBD12Q3ZCT8 623 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 LONRF3Q496Y0 759 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 KSR2Q6VAB6 950 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 CCDC129Q6ZRS4 1044 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 IFNL2Q8IZJ0 200 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 RUBCNQ92622 972 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 EVI5LQ96CN4 794 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 GPATCH3Q96I76 525 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 DCAF5Q96JK2 942 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 PREBQ9HCU5 417 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 TMCO1Q9UM00 188 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 WDR17Q8IZU2 1322 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 TNS2Q63HR2 1409 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 ITGB4P16144 1822 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 CCT8L1PA6NM43 557 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 TAF5LO75529 589 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 CTDNEP1O95476 244 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 FAM200BP0CF97 657 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 ZFXP17010 805 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 PPARDQ03181 441 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 NKX1-1Q15270 411 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 CDC37Q16543 378 aaPredicted RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms