RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 FDX1P10109 184 aa21.12■□□□□ 0.97
CLN3-243ENST00000635973 CASTP20810 708 aaKnown RBP21.12■□□□□ 0.97
CLN3-243ENST00000635973 ZNF543Q08ER8 600 aa21.12■□□□□ 0.97
CLN3-243ENST00000635973 COL9A3Q14050 684 aaPredicted RBP21.12■□□□□ 0.97
CLN3-243ENST00000635973 ASPRV1Q53RT3 343 aa21.12■□□□□ 0.97
CLN3-243ENST00000635973 GPATCH4Q5T3I0 446 aaKnown RBP21.12■□□□□ 0.97
CLN3-243ENST00000635973 ANKRD35Q8N283 1001 aa21.12■□□□□ 0.97
CLN3-243ENST00000635973 TCEANC2Q96MN5 208 aa21.12■□□□□ 0.97
CLN3-243ENST00000635973 SLC38A10Q9HBR0 1119 aa21.12■□□□□ 0.97
CLN3-243ENST00000635973 SENP2Q9HC62 589 aa21.12■□□□□ 0.97
CLN3-243ENST00000635973 RAVER2Q9HCJ3 691 aaKnown RBP21.12■□□□□ 0.97
CLN3-243ENST00000635973 XPNPEP3Q9NQH7 507 aa21.12■□□□□ 0.97
CLN3-243ENST00000635973 FBXO40Q9UH90 709 aa21.12■□□□□ 0.97
CLN3-243ENST00000635973 ATP2A1O14983 1001 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 SEC24BO95487 1268 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 GOLGA8HP0CJ92 632 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 SNHG28P0DPA3 235 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 OAZ1P54368 228 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 MDM2Q00987 491 aaPredicted RBP21.11■□□□□ 0.97
CLN3-243ENST00000635973 RNF180Q86T96 592 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 TDHQ8IZJ6 230 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 TMTC2Q8N394 836 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 NUP133Q8WUM0 1156 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 LRCH3Q96II8 777 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 GPHNQ9NQX3 736 aaPredicted RBP21.11■□□□□ 0.97
CLN3-243ENST00000635973 ATP11BQ9Y2G3 1177 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 RIPK3Q9Y572 518 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 LAMA3Q16787 3333 aa21.11■□□□□ 0.97
CLN3-243ENST00000635973 PLA2G6O60733 806 aa21.1■□□□□ 0.97
CLN3-243ENST00000635973 AKR1A1P14550 325 aa21.1■□□□□ 0.97
CLN3-243ENST00000635973 CPA1P15085 419 aa21.1■□□□□ 0.97
CLN3-243ENST00000635973 SLC16A2P36021 539 aa21.1■□□□□ 0.97
CLN3-243ENST00000635973 RTP1P59025 263 aa21.1■□□□□ 0.97
CLN3-243ENST00000635973 LRRC41Q15345 812 aa21.1■□□□□ 0.97
CLN3-243ENST00000635973 SYDE2Q5VT97 1194 aa21.1■□□□□ 0.97
CLN3-243ENST00000635973 TTBK2Q6IQ55 1244 aa21.1■□□□□ 0.97
CLN3-243ENST00000635973 MSL3Q8N5Y2 521 aaKnown RBP21.1■□□□□ 0.97
CLN3-243ENST00000635973 PRR12Q9ULL5 1215 aa21.1■□□□□ 0.97
CLN3-243ENST00000635973 DHX16O60231 1041 aaKnown RBP21.09■□□□□ 0.97
CLN3-243ENST00000635973 DDAH1O94760 285 aa21.09■□□□□ 0.97
CLN3-243ENST00000635973 ADCYAP1R1P41586 468 aa21.09■□□□□ 0.97
CLN3-243ENST00000635973 LIFRP42702 1097 aa21.09■□□□□ 0.97
CLN3-243ENST00000635973 EXOSC10Q01780 885 aaKnown RBP21.09■□□□□ 0.97
CLN3-243ENST00000635973 SLC39A5Q6ZMH5 540 aa21.09■□□□□ 0.97
CLN3-243ENST00000635973 ZNF654Q8IZM8 581 aa21.09■□□□□ 0.97
CLN3-243ENST00000635973 CHST13Q8NET6 341 aa21.09■□□□□ 0.97
CLN3-243ENST00000635973 FERMT2Q96AC1 680 aa21.09■□□□□ 0.97
CLN3-243ENST00000635973 SLC12A7Q9Y666 1083 aa21.09■□□□□ 0.97
CLN3-243ENST00000635973 RPS6KB1P23443 525 aa21.08■□□□□ 0.97
CLN3-243ENST00000635973 SYNE3Q6ZMZ3 975 aa21.08■□□□□ 0.97
CLN3-243ENST00000635973 HOMER2Q9NSB8 354 aa21.08■□□□□ 0.97
CLN3-243ENST00000635973 CYP46A1Q9Y6A2 500 aa21.08■□□□□ 0.97
CLN3-243ENST00000635973 SYNGAP1Q96PV0 1343 aa21.07■□□□□ 0.96
CLN3-243ENST00000635973 TAL1P17542 331 aaPredicted RBP21.07■□□□□ 0.96
CLN3-243ENST00000635973 ANAPC15P60006 121 aa21.07■□□□□ 0.96
CLN3-243ENST00000635973 SNAP25P60880 206 aa21.07■□□□□ 0.96
CLN3-243ENST00000635973 GRM4Q14833 912 aa21.07■□□□□ 0.96
CLN3-243ENST00000635973 CCDC174Q6PII3 467 aa21.07■□□□□ 0.96
CLN3-243ENST00000635973 BTNL9Q6UXG8 535 aa21.07■□□□□ 0.96
CLN3-243ENST00000635973 CTCFLQ8NI51 663 aaPredicted RBP21.07■□□□□ 0.96
CLN3-243ENST00000635973 MYL10Q9BUA6 226 aa21.07■□□□□ 0.96
CLN3-243ENST00000635973 UPF2Q9HAU5 1272 aaKnown RBP21.07■□□□□ 0.96
CLN3-243ENST00000635973 PRDM5Q9NQX1 630 aaPredicted RBP21.07■□□□□ 0.96
CLN3-243ENST00000635973 ZHX1Q9UKY1 873 aaPredicted RBP21.07■□□□□ 0.96
CLN3-243ENST00000635973 FAM184BQ9ULE4 1060 aa21.07■□□□□ 0.96
CLN3-243ENST00000635973 NAP1L2Q9ULW6 460 aaPredicted RBP21.07■□□□□ 0.96
CLN3-243ENST00000635973 PGK1P00558 417 aa21.06■□□□□ 0.96
CLN3-243ENST00000635973 ZNF865P0CJ78 1059 aaPredicted RBP21.06■□□□□ 0.96
CLN3-243ENST00000635973 KIF5BP33176 963 aa21.06■□□□□ 0.96
CLN3-243ENST00000635973 Q6ZUG5 572 aa21.06■□□□□ 0.96
CLN3-243ENST00000635973 RUFY3Q7L099 469 aa21.06■□□□□ 0.96
CLN3-243ENST00000635973 ZNF467Q7Z7K2 595 aaPredicted RBP21.06■□□□□ 0.96
CLN3-243ENST00000635973 UPF3BQ9BZI7 483 aaKnown RBP21.06■□□□□ 0.96
CLN3-243ENST00000635973 UBA5Q9GZZ9 404 aa21.06■□□□□ 0.96
CLN3-243ENST00000635973 CPVLQ9H3G5 476 aa21.06■□□□□ 0.96
CLN3-243ENST00000635973 ACAD9Q9H845 621 aa21.06■□□□□ 0.96
CLN3-243ENST00000635973 ZSWIM6Q9HCJ5 1215 aa21.06■□□□□ 0.96
CLN3-243ENST00000635973 MCM3APO60318 1980 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 DNAJC25-GNG10A0A024R161 153 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 CALM1P0DP23 149 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 CALM2P0DP24 149 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 CALM3P0DP25 149 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 TROAPQ12815 778 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 LRIT3Q3SXY7 679 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 TRIM60Q495X7 471 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 MAMDC4Q6UXC1 1216 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 SGMS1Q86VZ5 419 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 MICU3Q86XE3 530 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 RAB11FIP4Q86YS3 637 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 STAG2Q8N3U4 1231 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 TM6SF1Q9BZW5 370 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 MAD2L2Q9UI95 211 aa21.05■□□□□ 0.96
CLN3-243ENST00000635973 KLRF2D3W0D1 207 aa21.04■□□□□ 0.96
CLN3-243ENST00000635973 RXRAP19793 462 aa21.04■□□□□ 0.96
CLN3-243ENST00000635973 TKFCQ3LXA3 575 aa21.04■□□□□ 0.96
CLN3-243ENST00000635973 CCDC144CPQ8IYA2 1237 aa21.04■□□□□ 0.96
CLN3-243ENST00000635973 BRF1Q92994 677 aa21.04■□□□□ 0.96
CLN3-243ENST00000635973 RANBP17Q9H2T7 1088 aaKnown RBP21.04■□□□□ 0.96
CLN3-243ENST00000635973 RNF146Q9NTX7 359 aa21.04■□□□□ 0.96
CLN3-243ENST00000635973 PHF24Q9UPV7 400 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms