RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 FMR1Q06787 632 aaKnown RBP eCLIP24.93■■□□□ 1.58
PNKP-220ENST00000627232 QRICH1Q2TAL8 776 aa24.93■■□□□ 1.58
PNKP-220ENST00000627232 DALRD3Q5D0E6 543 aaKnown RBP24.93■■□□□ 1.58
PNKP-220ENST00000627232 MTRQ99707 1265 aa24.93■■□□□ 1.58
PNKP-220ENST00000627232 CLRN2A0PK11 232 aa24.92■■□□□ 1.58
PNKP-220ENST00000627232 SERPINC1P01008 464 aa24.92■■□□□ 1.58
PNKP-220ENST00000627232 ZNF18P17022 549 aa24.92■■□□□ 1.58
PNKP-220ENST00000627232 UBASH3AP57075 661 aa24.92■■□□□ 1.58
PNKP-220ENST00000627232 LRMPQ12912 555 aa24.92■■□□□ 1.58
PNKP-220ENST00000627232 FAM83AQ86UY5 434 aa24.92■■□□□ 1.58
PNKP-220ENST00000627232 ZBED3Q96IU2 234 aaPredicted RBP24.92■■□□□ 1.58
PNKP-220ENST00000627232 MTMR9Q96QG7 549 aa24.92■■□□□ 1.58
PNKP-220ENST00000627232 NAP1L4Q99733 375 aaKnown RBP24.92■■□□□ 1.58
PNKP-220ENST00000627232 NFE2L3Q9Y4A8 694 aa24.92■■□□□ 1.58
PNKP-220ENST00000627232 TBC1D12O60347 775 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 CASP1P29466 404 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 CUL4BQ13620 913 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 RRP1BQ14684 758 aaKnown RBP24.91■■□□□ 1.58
PNKP-220ENST00000627232 CDC37Q16543 378 aaPredicted RBP24.91■■□□□ 1.58
PNKP-220ENST00000627232 NAALADL2Q58DX5 795 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 MCTP2Q6DN12 878 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 PPP4R3AQ6IN85 833 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 BTNL9Q6UXG8 535 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 CABP7Q86V35 215 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 MTFR1LQ9H019 292 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 PSTPIP2Q9H939 334 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 ZBTB12Q9Y330 459 aaPredicted RBP24.91■■□□□ 1.58
PNKP-220ENST00000627232 MYH7BA7E2Y1 1941 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 PPP1R3GB7ZBB8 358 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 NDUFB10O96000 172 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 CDC25AP30304 524 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 FXR2P51116 673 aaKnown RBP eCLIP24.91■■□□□ 1.58
PNKP-220ENST00000627232 TERF1P54274 439 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 JAG1P78504 1218 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 CXCL9Q07325 125 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 SPATA1Q5VX52 437 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 TMC6Q7Z403 805 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 FILIP1Q7Z7B0 1213 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 IGSF22Q8N9C0 903 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 CCDC150Q8NCX0 1101 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 RASSF8Q8NHQ8 419 aa24.91■■□□□ 1.58
PNKP-220ENST00000627232 ATF5Q9Y2D1 282 aaPredicted RBP24.91■■□□□ 1.58
PNKP-220ENST00000627232 PP2D1A8MPX8 630 aa24.9■■□□□ 1.58
PNKP-220ENST00000627232 EDIL3O43854 480 aa24.9■■□□□ 1.58
PNKP-220ENST00000627232 RAD21O60216 631 aa24.9■■□□□ 1.58
PNKP-220ENST00000627232 GCFC2P16383 781 aaKnown RBP24.9■■□□□ 1.58
PNKP-220ENST00000627232 CALCRLQ16602 461 aa24.9■■□□□ 1.58
PNKP-220ENST00000627232 POTEDQ86YR6 584 aa24.9■■□□□ 1.58
PNKP-220ENST00000627232 STAMQ92783 540 aa24.9■■□□□ 1.58
PNKP-220ENST00000627232 MED15Q96RN5 788 aa24.9■■□□□ 1.58
PNKP-220ENST00000627232 BLZF1Q9H2G9 400 aa24.9■■□□□ 1.58
PNKP-220ENST00000627232 TAOK3Q9H2K8 898 aa24.9■■□□□ 1.58
PNKP-220ENST00000627232 ARHGEF10LQ9HCE6 1279 aa24.9■■□□□ 1.58
PNKP-220ENST00000627232 KBTBD4Q9NVX7 518 aa24.9■■□□□ 1.58
PNKP-220ENST00000627232 ZBTB7AO95365 584 aa24.89■■□□□ 1.57
PNKP-220ENST00000627232 RPN1P04843 607 aaKnown RBP24.89■■□□□ 1.57
PNKP-220ENST00000627232 BMP3P12645 472 aa24.89■■□□□ 1.57
PNKP-220ENST00000627232 CD44P16070 742 aaKnown RBP24.89■■□□□ 1.57
PNKP-220ENST00000627232 TNNI2P48788 182 aa24.89■■□□□ 1.57
PNKP-220ENST00000627232 UBE2SQ16763 222 aa24.89■■□□□ 1.57
PNKP-220ENST00000627232 TMEM266Q2M3C6 531 aa24.89■■□□□ 1.57
PNKP-220ENST00000627232 ZNF658Q5TYW1 1059 aaPredicted RBP24.89■■□□□ 1.57
PNKP-220ENST00000627232 SYDE2Q5VT97 1194 aa24.89■■□□□ 1.57
PNKP-220ENST00000627232 CIAPIN1Q6FI81 312 aa24.89■■□□□ 1.57
PNKP-220ENST00000627232 PCDHA1Q9Y5I3 950 aa24.89■■□□□ 1.57
PNKP-220ENST00000627232 SYNRGQ9UMZ2 1314 aa24.88■■□□□ 1.57
PNKP-220ENST00000627232 KCNB1Q14721 858 aa24.88■■□□□ 1.57
PNKP-220ENST00000627232 AMNQ9BXJ7 453 aa24.88■■□□□ 1.57
PNKP-220ENST00000627232 TECP42680 631 aa24.87■■□□□ 1.57
PNKP-220ENST00000627232 PDIA5Q14554 519 aa24.87■■□□□ 1.57
PNKP-220ENST00000627232 TRMT44Q8IYL2 757 aaKnown RBP24.87■■□□□ 1.57
PNKP-220ENST00000627232 C17orf53Q8N3J3 647 aaPredicted RBP24.87■■□□□ 1.57
PNKP-220ENST00000627232 JDP2Q8WYK2 163 aa24.87■■□□□ 1.57
PNKP-220ENST00000627232 DPF2Q92785 391 aa24.87■■□□□ 1.57
PNKP-220ENST00000627232 NAP1L5Q96NT1 182 aaPredicted RBP24.87■■□□□ 1.57
PNKP-220ENST00000627232 RAB34Q9BZG1 259 aa24.87■■□□□ 1.57
PNKP-220ENST00000627232 TDP2O95551 362 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 CDK11BP21127 795 aaKnown RBP24.86■■□□□ 1.57
PNKP-220ENST00000627232 AP3B2Q13367 1082 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 TNIP1Q15025 636 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 VSTM4Q8IW00 320 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 TEX2Q8IWB9 1127 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 CALML4Q96GE6 196 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 VEZTQ9HBM0 779 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 A0A1W2PRG0 241 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 TMEM232C9JQI7 657 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 SLC37A4O43826 429 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 PLCG1P19174 1290 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 CCZ1BP86790 482 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 CCZ1P86791 482 aaPredicted RBP24.86■■□□□ 1.57
PNKP-220ENST00000627232 ARID5BQ14865 1188 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 FBXO11Q86XK2 927 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 GTPBP4Q9BZE4 634 aaKnown RBP24.86■■□□□ 1.57
PNKP-220ENST00000627232 GOPCQ9HD26 462 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 ZBTB21Q9ULJ3 1066 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 TMX2Q9Y320 296 aa24.86■■□□□ 1.57
PNKP-220ENST00000627232 TXKP42681 527 aa24.85■■□□□ 1.57
PNKP-220ENST00000627232 USP11P51784 963 aa24.85■■□□□ 1.57
PNKP-220ENST00000627232 MAP3K10Q02779 954 aa24.85■■□□□ 1.57
PNKP-220ENST00000627232 TRAF1Q13077 416 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms