RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 LENG1Q96BZ8 264 aaPredicted RBP17.33■□□□□ 0.36
LINC00643-206ENST00000623985 RBM27Q9P2N5 1060 aaKnown RBP17.33■□□□□ 0.36
LINC00643-206ENST00000623985 SOWAHBA6NEL2 793 aa17.32■□□□□ 0.36
LINC00643-206ENST00000623985 NFIBO00712 420 aa17.32■□□□□ 0.36
LINC00643-206ENST00000623985 ADAMTS4O75173 837 aa17.32■□□□□ 0.36
LINC00643-206ENST00000623985 DUSP11O75319 330 aaKnown RBP17.32■□□□□ 0.36
LINC00643-206ENST00000623985 PGK1P00558 417 aa17.32■□□□□ 0.36
LINC00643-206ENST00000623985 PARP1P09874 1014 aaKnown RBP17.32■□□□□ 0.36
LINC00643-206ENST00000623985 NCOA7Q8NI08 942 aa17.32■□□□□ 0.36
LINC00643-206ENST00000623985 KATNBL1Q9H079 304 aa17.32■□□□□ 0.36
LINC00643-206ENST00000623985 ZMYND8Q9ULU4 1186 aaPredicted RBP17.32■□□□□ 0.36
LINC00643-206ENST00000623985 PHF24Q9UPV7 400 aa17.32■□□□□ 0.36
LINC00643-206ENST00000623985 RBM8AQ9Y5S9 174 aaKnown RBP17.32■□□□□ 0.36
LINC00643-206ENST00000623985 LAMA2P24043 3122 aaKnown RBP17.32■□□□□ 0.36
LINC00643-206ENST00000623985 LOC102724159A0A0B4J2E5 919 aa17.31■□□□□ 0.36
LINC00643-206ENST00000623985 A0A1W2PPC1 479 aa17.31■□□□□ 0.36
LINC00643-206ENST00000623985 E7EWF7 191 aa17.31■□□□□ 0.36
LINC00643-206ENST00000623985 ATN1P54259 1190 aaPredicted RBP17.31■□□□□ 0.36
LINC00643-206ENST00000623985 SNX17Q15036 470 aa17.31■□□□□ 0.36
LINC00643-206ENST00000623985 PWP2Q15269 919 aaKnown RBP17.31■□□□□ 0.36
LINC00643-206ENST00000623985 CDC37Q16543 378 aaPredicted RBP17.31■□□□□ 0.36
LINC00643-206ENST00000623985 CCDC144BQ3MJ40 725 aa17.31■□□□□ 0.36
LINC00643-206ENST00000623985 KIAA1211Q6ZU35 1233 aa17.31■□□□□ 0.36
LINC00643-206ENST00000623985 ESYT1Q9BSJ8 1104 aa17.31■□□□□ 0.36
LINC00643-206ENST00000623985 ADD3Q9UEY8 706 aaKnown RBP17.31■□□□□ 0.36
LINC00643-206ENST00000623985 ERICH2A1L162 156 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 PTPDC1A2A3K4 754 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 SYN1P17600 705 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 CST5P28325 142 aaPredicted RBP17.3■□□□□ 0.36
LINC00643-206ENST00000623985 ADCYAP1R1P41586 468 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 RTP1P59025 263 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 SART3Q15020 963 aaKnown RBP17.3■□□□□ 0.36
LINC00643-206ENST00000623985 C1orf53Q5VUE5 145 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 SLC30A10Q6XR72 485 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 SLC39A5Q6ZMH5 540 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 STOX1Q6ZVD7 989 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 ADGRF4Q8IZF3 695 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 CLEC4DQ8WXI8 215 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 GDF15Q99988 308 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 TSEN34Q9BSV6 310 aaKnown RBP17.3■□□□□ 0.36
LINC00643-206ENST00000623985 UBA5Q9GZZ9 404 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 CPVLQ9H3G5 476 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 TAF6LQ9Y6J9 622 aa17.3■□□□□ 0.36
LINC00643-206ENST00000623985 ABCB11O95342 1321 aa17.29■□□□□ 0.36
LINC00643-206ENST00000623985 MOXD2PA6NHM9 499 aa17.29■□□□□ 0.36
LINC00643-206ENST00000623985 ADCY6O43306 1168 aa17.29■□□□□ 0.36
LINC00643-206ENST00000623985 BMP8BP34820 402 aa17.29■□□□□ 0.36
LINC00643-206ENST00000623985 FXR1P51114 621 aaKnown RBP eCLIP17.29■□□□□ 0.36
LINC00643-206ENST00000623985 ALDH5A1P51649 535 aaPredicted RBP17.29■□□□□ 0.36
LINC00643-206ENST00000623985 BAATQ14032 418 aaPredicted RBP17.29■□□□□ 0.36
LINC00643-206ENST00000623985 USH1GQ495M9 461 aa17.29■□□□□ 0.36
LINC00643-206ENST00000623985 RNF207Q6ZRF8 634 aa17.29■□□□□ 0.36
LINC00643-206ENST00000623985 MORC4Q8TE76 937 aa17.29■□□□□ 0.36
LINC00643-206ENST00000623985 MAF1Q9H063 256 aa17.29■□□□□ 0.36
LINC00643-206ENST00000623985 LSG1Q9H089 658 aaKnown RBP17.29■□□□□ 0.36
LINC00643-206ENST00000623985 UPF3AQ9H1J1 476 aaKnown RBP17.29■□□□□ 0.36
LINC00643-206ENST00000623985 A0A1W2PQ45 241 aaPredicted RBP17.28■□□□□ 0.36
LINC00643-206ENST00000623985 A0A1W2PQY0 241 aa17.28■□□□□ 0.36
LINC00643-206ENST00000623985 IFIT3O14879 490 aaKnown RBP17.28■□□□□ 0.36
LINC00643-206ENST00000623985 WTAPQ15007 396 aa17.28■□□□□ 0.36
LINC00643-206ENST00000623985 SKAP1Q86WV1 359 aa17.28■□□□□ 0.36
LINC00643-206ENST00000623985 MB21D2Q8IYB1 491 aaPredicted RBP17.28■□□□□ 0.36
LINC00643-206ENST00000623985 KLHDC9Q8NEP7 349 aa17.28■□□□□ 0.36
LINC00643-206ENST00000623985 FERMT2Q96AC1 680 aa17.28■□□□□ 0.36
LINC00643-206ENST00000623985 CCDC136Q96JN2 1154 aa17.28■□□□□ 0.36
LINC00643-206ENST00000623985 SPC25Q9HBM1 224 aa17.28■□□□□ 0.36
LINC00643-206ENST00000623985 VTA1Q9NP79 307 aa17.28■□□□□ 0.36
LINC00643-206ENST00000623985 ATP11BQ9Y2G3 1177 aa17.28■□□□□ 0.36
LINC00643-206ENST00000623985 DOCK5Q9H7D0 1870 aa17.28■□□□□ 0.36
LINC00643-206ENST00000623985 SCN10AQ9Y5Y9 1956 aa17.28■□□□□ 0.36
LINC00643-206ENST00000623985 TANC1Q9C0D5 1861 aa17.27■□□□□ 0.36
LINC00643-206ENST00000623985 DHX16O60231 1041 aaKnown RBP17.27■□□□□ 0.36
LINC00643-206ENST00000623985 C6orf222P0C671 652 aaPredicted RBP17.27■□□□□ 0.36
LINC00643-206ENST00000623985 MAGEA10P43363 369 aaPredicted RBP17.27■□□□□ 0.36
LINC00643-206ENST00000623985 GJA9P57773 515 aa17.27■□□□□ 0.36
LINC00643-206ENST00000623985 RPS6P62753 249 aaKnown RBP17.27■□□□□ 0.36
LINC00643-206ENST00000623985 QRICH1Q2TAL8 776 aa17.27■□□□□ 0.36
LINC00643-206ENST00000623985 TRIM60Q495X7 471 aa17.27■□□□□ 0.36
LINC00643-206ENST00000623985 FBXO16Q8IX29 292 aaPredicted RBP17.27■□□□□ 0.36
LINC00643-206ENST00000623985 MAD2L2Q9UI95 211 aa17.27■□□□□ 0.36
LINC00643-206ENST00000623985 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.26■□□□□ 0.35
LINC00643-206ENST00000623985 MYADML2A6NDP7 307 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 CALML3P27482 149 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 ACLYP53396 1101 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 ANTXR2P58335 489 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 NKX3-2P78367 333 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 TNFAIP2Q03169 654 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 GRM4Q14833 912 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 CCSAPQ6IQ19 270 aaPredicted RBP17.26■□□□□ 0.35
LINC00643-206ENST00000623985 CASC1Q6TDU7 716 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 TLK2Q86UE8 772 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 FBXO11Q86XK2 927 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 STAG2Q8N3U4 1231 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 PCSK9Q8NBP7 692 aaKnown RBP17.26■□□□□ 0.35
LINC00643-206ENST00000623985 RGS22Q8NE09 1264 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 DNERQ8NFT8 737 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 NUP133Q8WUM0 1156 aa17.26■□□□□ 0.35
LINC00643-206ENST00000623985 PURBQ96QR8 312 aaKnown RBP17.26■□□□□ 0.35
LINC00643-206ENST00000623985 MPHOSPH6Q99547 160 aaKnown RBP17.26■□□□□ 0.35
LINC00643-206ENST00000623985 MTA3Q9BTC8 594 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms