RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 RHBDL3P58872 404 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 TOGARAM2Q6ZUX3 1019 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 GPR161Q8N6U8 529 aaKnown RBP16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 SRRTQ9BXP5 876 aaKnown RBP16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 RNF216Q9NWF9 866 aaPredicted RBP16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 ZSCAN12O43309 604 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 E2F4Q16254 413 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 SBK1Q52WX2 424 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 CCDC84Q86UT8 332 aaPredicted RBP16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 NOC3LQ8WTT2 800 aaKnown RBP16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 FAN1Q9Y2M0 1017 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 A0A0U1RQJ8 604 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 USP17L15C9J2P7 530 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 USP17L13C9JLJ4 530 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 USP17L11C9JVI0 530 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 USP17L18D6R9N7 530 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 USP17L22D6RA61 530 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 USP17L17D6RBQ6 530 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 USP17L19D6RCP7 530 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 USP17L20D6RJB6 530 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 CALML3P27482 149 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 USP17L24Q0WX57 530 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 USP17L6PQ6QN14 398 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 ATRIPQ8WXE1 791 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 EFCC1Q9HA90 598 aa16.23■□□□□ 0.19
SHROOM1-208ENST00000617339 SYNRGQ9UMZ2 1314 aa16.22■□□□□ 0.19
SHROOM1-208ENST00000617339 TTC31Q49AM3 519 aaPredicted RBP16.22■□□□□ 0.19
SHROOM1-208ENST00000617339 PPFIBP1Q86W92 1011 aa16.22■□□□□ 0.19
SHROOM1-208ENST00000617339 GOLGA1Q92805 767 aa16.22■□□□□ 0.19
SHROOM1-208ENST00000617339 INTS13Q9NVM9 706 aa16.22■□□□□ 0.19
SHROOM1-208ENST00000617339 SERPINB13Q9UIV8 391 aa16.22■□□□□ 0.19
SHROOM1-208ENST00000617339 GPR75-ASB3A0A0A6YYF3 556 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 POTEMA6NI47 508 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 USP17L10C9JJH3 530 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 CBFA2T2O43439 604 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 TDP2O95551 362 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 ASIC1P78348 528 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 KCND1Q9NSA2 647 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 MKRN1Q9UHC7 482 aaKnown RBP16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 PPP2R5BQ15173 497 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 ENOX2Q16206 610 aaKnown RBP16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 CDC42EP5Q6NZY7 148 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 POTEDQ86YR6 584 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 MLKLQ8NB16 471 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 CDK5RAP3Q96JB5 506 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 MTRQ99707 1265 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 ZBTB12Q9Y330 459 aaPredicted RBP16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 SRGNP10124 158 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 IGSF22Q8N9C0 903 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 TCP11L1Q9NUJ3 509 aa16.21■□□□□ 0.19
SHROOM1-208ENST00000617339 ATP2C1P98194 919 aaPredicted RBP16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 MORC3Q14149 939 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 PACS2Q86VP3 889 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 NELFBQ8WX92 580 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 FERMT2Q96AC1 680 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 C6orf50Q9HD87 102 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 SOWAHDA6NJG2 315 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 GRM4Q14833 912 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 LRRC41Q15345 812 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 ICE2Q659A1 982 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 MIGA2Q7L4E1 593 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 TEKT1Q969V4 418 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 EXOC4Q96A65 974 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 BAG1Q99933 345 aaPredicted RBP16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 RABEP2Q9H5N1 569 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 SLC39A2Q9NP94 309 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 DACH1Q9UI36 760 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 STXBP3O00186 592 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 GNAQP50148 359 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 UBXN2AP68543 259 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 KANK3Q6NY19 840 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 REXO1Q8N1G1 1221 aaKnown RBP16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 TRIM47Q96LD4 638 aa16.2■□□□□ 0.18
SHROOM1-208ENST00000617339 JDP2Q8WYK2 163 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 KANSL2Q9H9L4 492 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 TFR2Q9UP52 801 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 ATP6V0A2Q9Y487 856 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 DDTLA6NHG4 134 aaPredicted RBP16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 IKBKBO14920 756 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 PRCPP42785 496 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 RBL2Q08999 1139 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 NONOQ15233 471 aaKnown RBP eCLIP16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 RPN1P04843 607 aaKnown RBP16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 PLCG2P16885 1265 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 PLCG1P19174 1290 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 CASP14P31944 242 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 FCHSD1Q86WN1 690 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 RGS22Q8NE09 1264 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 BARHL2Q9NY43 387 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 JRKLQ9Y4A0 524 aa16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 DDX60Q8IY21 1712 aaKnown RBP16.19■□□□□ 0.18
SHROOM1-208ENST00000617339 ANKRD36CQ5JPF3 1778 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 FCER1AP12319 257 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 CRKP46108 304 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 SEPT2Q15019 361 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 CABP7Q86V35 215 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 VSTM4Q8IW00 320 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 CCDC148Q8NFR7 591 aa16.18■□□□□ 0.18
SHROOM1-208ENST00000617339 NEDD1Q8NHV4 660 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms