RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 UBXN6Q9BZV1 441 aa15.72■□□□□ 0.11
COL6A1-207ENST00000612273 NHEJ1Q9H9Q4 299 aaPredicted RBP15.72■□□□□ 0.11
COL6A1-207ENST00000612273 MLXIPQ9HAP2 919 aa15.72■□□□□ 0.11
COL6A1-207ENST00000612273 LONP1P36776 959 aaKnown RBP15.72■□□□□ 0.11
COL6A1-207ENST00000612273 C4orf32Q8N8J7 132 aa15.72■□□□□ 0.11
COL6A1-207ENST00000612273 FRMPD2Q68DX3 1309 aaPredicted RBP15.72■□□□□ 0.11
COL6A1-207ENST00000612273 UBR2Q8IWV8 1755 aa15.72■□□□□ 0.11
COL6A1-207ENST00000612273 PDE2AO00408 941 aaPredicted RBP15.72■□□□□ 0.11
COL6A1-207ENST00000612273 RCAN1P53805 252 aa15.72■□□□□ 0.11
COL6A1-207ENST00000612273 WHAMMP3Q1A5X7 153 aa15.72■□□□□ 0.11
COL6A1-207ENST00000612273 LRRC10BA6NIK2 292 aa15.71■□□□□ 0.11
COL6A1-207ENST00000612273 CCDC42Q96M95 316 aa15.71■□□□□ 0.11
COL6A1-207ENST00000612273 PARP4Q9UKK3 1724 aaKnown RBP15.71■□□□□ 0.11
COL6A1-207ENST00000612273 SEMA3EO15041 775 aa15.71■□□□□ 0.11
COL6A1-207ENST00000612273 EPHB6O15197 1021 aa15.71■□□□□ 0.11
COL6A1-207ENST00000612273 LINC00116Q8NCU8 138 aa15.71■□□□□ 0.11
COL6A1-207ENST00000612273 GLIS3Q8NEA6 775 aa15.71■□□□□ 0.11
COL6A1-207ENST00000612273 HDAC7Q8WUI4 952 aa15.71■□□□□ 0.11
COL6A1-207ENST00000612273 SETDB2Q96T68 719 aa15.71■□□□□ 0.11
COL6A1-207ENST00000612273 SMCO2A6NFE2 343 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 TMC4Q7Z404 712 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 TMEM47Q9BQJ4 181 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 CRACR2AQ9BSW2 395 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 NLRC4Q9NPP4 1024 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 F8W031 263 aaPredicted RBP15.7■□□□□ 0.1
COL6A1-207ENST00000612273 NCK2O43639 380 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 BUB1O43683 1085 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 KRT86O43790 486 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 RNF40O75150 1001 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 LDHBP07195 334 aaKnown RBP15.7■□□□□ 0.1
COL6A1-207ENST00000612273 CACNB1Q02641 598 aaPredicted RBP15.7■□□□□ 0.1
COL6A1-207ENST00000612273 GOLGA6L1Q8N7Z2 621 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 MSANTD4Q8NCY6 345 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 DUSP9Q99956 384 aaKnown RBP15.7■□□□□ 0.1
COL6A1-207ENST00000612273 MTA3Q9BTC8 594 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 ZHX3Q9H4I2 956 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 ITIH6Q6UXX5 1313 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 NID2Q14112 1375 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 KLRC4O43908 158 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 MOCS3O95396 460 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 SLURP2P0DP57 97 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 AMPD2Q01433 879 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 NFIXQ14938 502 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 FAM98CQ17RN3 349 aaKnown RBP15.7■□□□□ 0.1
COL6A1-207ENST00000612273 FBXO33Q7Z6M2 555 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 COA7Q96BR5 231 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 HAUS4Q9H6D7 363 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 MAD2L2Q9UI95 211 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 ECM29Q5VYK3 1845 aa15.7■□□□□ 0.1
COL6A1-207ENST00000612273 POTEMA6NI47 508 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 AKR1B10O60218 316 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 APBA1Q02410 837 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 KIF5AQ12840 1032 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 TTI2Q6NXR4 508 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 ATP8A2Q9NTI2 1148 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 ARPP21Q9UBL0 812 aaPredicted RBP15.69■□□□□ 0.1
COL6A1-207ENST00000612273 GNPATO15228 680 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 ORC4O43929 436 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 MARCH6O60337 910 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 ACTN2P35609 894 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 TRAPPC10P48553 1259 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 PICALMQ13492 652 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 SPA17Q15506 151 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 TDRD12Q587J7 1177 aaKnown RBP15.69■□□□□ 0.1
COL6A1-207ENST00000612273 POTEDQ86YR6 584 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 TBCKQ8TEA7 893 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 EXOC4Q96A65 974 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 PIGSQ96S52 555 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 RAB21Q9UL25 225 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 LRP6O75581 1613 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 POTEB2H3BUK9 544 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 CYLC1P35663 651 aaPredicted RBP15.69■□□□□ 0.1
COL6A1-207ENST00000612273 NUP98P52948 1817 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 RRAGAQ7L523 313 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 COG1Q8WTW3 980 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 P2RX5Q93086 422 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 CDK5RAP3Q96JB5 506 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 CAPN6Q9Y6Q1 641 aa15.69■□□□□ 0.1
COL6A1-207ENST00000612273 MYO1CO00159 1063 aa15.68■□□□□ 0.1
COL6A1-207ENST00000612273 DNM2P50570 870 aa15.68■□□□□ 0.1
COL6A1-207ENST00000612273 SOGA3Q5TF21 947 aa15.68■□□□□ 0.1
COL6A1-207ENST00000612273 TRIM9Q9C026 710 aa15.68■□□□□ 0.1
COL6A1-207ENST00000612273 TRIM14Q14142 442 aa15.68■□□□□ 0.1
COL6A1-207ENST00000612273 C12orf60Q5U649 245 aa15.68■□□□□ 0.1
COL6A1-207ENST00000612273 ARL6IP4Q66PJ3 421 aaKnown RBP15.68■□□□□ 0.1
COL6A1-207ENST00000612273 TRAPPC11Q7Z392 1133 aa15.68■□□□□ 0.1
COL6A1-207ENST00000612273 DNAAF5Q86Y56 855 aa15.68■□□□□ 0.1
COL6A1-207ENST00000612273 LRRC47Q8N1G4 583 aaKnown RBP15.68■□□□□ 0.1
COL6A1-207ENST00000612273 EHD4Q9H223 541 aa15.68■□□□□ 0.1
COL6A1-207ENST00000612273 CAPN11Q9UMQ6 739 aa15.68■□□□□ 0.1
COL6A1-207ENST00000612273 RASSF10A6NK89 507 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 GGCXP38435 758 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 NFRKBQ6P4R8 1299 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 AMOTL1Q8IY63 956 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 ZNF507Q8TCN5 953 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 GPCPD1Q9NPB8 672 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 FEZ2Q9UHY8 353 aaPredicted RBP15.67■□□□□ 0.1
COL6A1-207ENST00000612273 ZNF263O14978 683 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 OR52Z1P0C646 297 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 USP14P54578 494 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms