RNA–Protein interactions for RNA: ENST00000602164.5

USF2-215, Transcript of upstream transcription factor 2, c-fos interacting, human

TSL 3

Gene USF2, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USF2-215	ENST00000602164	CYTH3	O43739	400 aa		31.23	■■■□□ 2.59
USF2-215	ENST00000602164	HMGB1	P09429	215 aa	Known RBP	31.23	■■■□□ 2.59
USF2-215	ENST00000602164	CPA1	P15085	419 aa		31.23	■■■□□ 2.59
USF2-215	ENST00000602164	CNTN2	Q02246	1040 aa		31.23	■■■□□ 2.59
USF2-215	ENST00000602164	MAMDC4	Q6UXC1	1216 aa		31.23	■■■□□ 2.59
USF2-215	ENST00000602164	NFXL1	Q6ZNB6	911 aa		31.23	■■■□□ 2.59
USF2-215	ENST00000602164	NUP133	Q8WUM0	1156 aa		31.23	■■■□□ 2.59
USF2-215	ENST00000602164	VAT1L	Q9HCJ6	419 aa		31.23	■■■□□ 2.59
USF2-215	ENST00000602164	FRMPD3	Q5JV73	1810 aa		31.23	■■■□□ 2.59
USF2-215	ENST00000602164	DHX16	O60231	1041 aa	Known RBP	31.22	■■■□□ 2.59
USF2-215	ENST00000602164	UBE2Q1	Q7Z7E8	422 aa		31.22	■■■□□ 2.59
USF2-215	ENST00000602164	MSL3	Q8N5Y2	521 aa	Known RBP	31.22	■■■□□ 2.59
USF2-215	ENST00000602164	ASTN1	O14525	1302 aa		31.22	■■■□□ 2.59
USF2-215	ENST00000602164	MLLT1	Q03111	559 aa	Predicted RBP	31.21	■■■□□ 2.59
USF2-215	ENST00000602164	USH1G	Q495M9	461 aa		31.21	■■■□□ 2.59
USF2-215	ENST00000602164	LHX8	Q68G74	356 aa		31.21	■■■□□ 2.59
USF2-215	ENST00000602164	NSMF	Q6X4W1	530 aa		31.21	■■■□□ 2.59
USF2-215	ENST00000602164	MYH6	P13533	1939 aa		31.21	■■■□□ 2.59
USF2-215	ENST00000602164	SYNGAP1	Q96PV0	1343 aa		31.21	■■■□□ 2.59
USF2-215	ENST00000602164	SOWAHB	A6NEL2	793 aa		31.2	■■■□□ 2.59
USF2-215	ENST00000602164	POTEB2	H3BUK9	544 aa		31.2	■■■□□ 2.59
USF2-215	ENST00000602164	PPP1R11	O60927	126 aa	Predicted RBP	31.2	■■■□□ 2.59
USF2-215	ENST00000602164	PRAMEF19	Q5SWL8	479 aa		31.2	■■■□□ 2.59
USF2-215	ENST00000602164	NRBP1	Q9UHY1	535 aa		31.2	■■■□□ 2.59
USF2-215	ENST00000602164	TNRC18	O15417	2968 aa	Predicted RBP	31.19	■■■□□ 2.58
USF2-215	ENST00000602164	ZBTB5	O15062	677 aa		31.19	■■■□□ 2.58
USF2-215	ENST00000602164	SNAI1	O95863	264 aa	Predicted RBP	31.19	■■■□□ 2.58
USF2-215	ENST00000602164	CAPN2	P17655	700 aa		31.19	■■■□□ 2.58
USF2-215	ENST00000602164	RXRA	P19793	462 aa		31.19	■■■□□ 2.58
USF2-215	ENST00000602164	APOA5	Q6Q788	366 aa		31.19	■■■□□ 2.58
USF2-215	ENST00000602164	FBXO11	Q86XK2	927 aa		31.19	■■■□□ 2.58
USF2-215	ENST00000602164	CTCFL	Q8NI51	663 aa	Predicted RBP	31.19	■■■□□ 2.58
USF2-215	ENST00000602164	OGDHL	Q9ULD0	1010 aa		31.19	■■■□□ 2.58
USF2-215	ENST00000602164	BRPF3	Q9ULD4	1205 aa		31.19	■■■□□ 2.58
USF2-215	ENST00000602164	SLC12A7	Q9Y666	1083 aa		31.19	■■■□□ 2.58
USF2-215	ENST00000602164	ABCB11	O95342	1321 aa		31.19	■■■□□ 2.58
USF2-215	ENST00000602164	MKI67	P46013	3256 aa	Known RBP	31.18	■■■□□ 2.58
USF2-215	ENST00000602164	CALM1	P0DP23	149 aa		31.18	■■■□□ 2.58
USF2-215	ENST00000602164	CALM2	P0DP24	149 aa		31.18	■■■□□ 2.58
USF2-215	ENST00000602164	CALM3	P0DP25	149 aa		31.18	■■■□□ 2.58
USF2-215	ENST00000602164	KIF5B	P33176	963 aa		31.18	■■■□□ 2.58
USF2-215	ENST00000602164	BAAT	Q14032	418 aa	Predicted RBP	31.18	■■■□□ 2.58
USF2-215	ENST00000602164	BLOC1S2	Q6QNY1	142 aa		31.18	■■■□□ 2.58
USF2-215	ENST00000602164	SLC30A10	Q6XR72	485 aa		31.18	■■■□□ 2.58
USF2-215	ENST00000602164	RAB11FIP4	Q86YS3	637 aa		31.18	■■■□□ 2.58
USF2-215	ENST00000602164	PIGS	Q96S52	555 aa		31.18	■■■□□ 2.58
USF2-215	ENST00000602164	SPZ1	Q9BXG8	430 aa		31.18	■■■□□ 2.58
USF2-215	ENST00000602164	LRRC37A2	A6NM11	1700 aa		31.18	■■■□□ 2.58
USF2-215	ENST00000602164	PLEKHA8P1	O95397	391 aa		31.17	■■■□□ 2.58
USF2-215	ENST00000602164	RPS6KB1	P23443	525 aa		31.17	■■■□□ 2.58
USF2-215	ENST00000602164	PURB	Q96QR8	312 aa	Known RBP	31.17	■■■□□ 2.58
USF2-215	ENST00000602164	DDX20	Q9UHI6	824 aa	Known RBP	31.17	■■■□□ 2.58
USF2-215	ENST00000602164	BAZ2B	Q9UIF8	2168 aa	Known RBP	31.17	■■■□□ 2.58
USF2-215	ENST00000602164	MCM3AP	O60318	1980 aa		31.17	■■■□□ 2.58
USF2-215	ENST00000602164	TFRC	P02786	760 aa	Known RBP	31.16	■■■□□ 2.58
USF2-215	ENST00000602164	ZNF865	P0CJ78	1059 aa	Predicted RBP	31.16	■■■□□ 2.58
USF2-215	ENST00000602164	MNX1	P50219	401 aa	Predicted RBP	31.16	■■■□□ 2.58
USF2-215	ENST00000602164	FBXL16	Q8N461	479 aa		31.16	■■■□□ 2.58
USF2-215	ENST00000602164	RGS22	Q8NE09	1264 aa		31.16	■■■□□ 2.58
USF2-215	ENST00000602164	AMN	Q9BXJ7	453 aa		31.16	■■■□□ 2.58
USF2-215	ENST00000602164	AGXT2	Q9BYV1	514 aa		31.16	■■■□□ 2.58
USF2-215	ENST00000602164	SEPT4	O43236	478 aa		31.15	■■■□□ 2.58
USF2-215	ENST00000602164	CAST	P20810	708 aa	Known RBP	31.15	■■■□□ 2.58
USF2-215	ENST00000602164	PSMA5	P28066	241 aa		31.15	■■■□□ 2.58
USF2-215	ENST00000602164	SMARCA1	P28370	1054 aa		31.15	■■■□□ 2.58
USF2-215	ENST00000602164	ARMCX2	Q7L311	632 aa		31.15	■■■□□ 2.58
USF2-215	ENST00000602164	MICU3	Q86XE3	530 aa		31.15	■■■□□ 2.58
USF2-215	ENST00000602164	HOMER1	Q86YM7	354 aa		31.15	■■■□□ 2.58
USF2-215	ENST00000602164	CCDC144CP	Q8IYA2	1237 aa		31.15	■■■□□ 2.58
USF2-215	ENST00000602164	FANCB	Q8NB91	859 aa		31.15	■■■□□ 2.58
USF2-215	ENST00000602164	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	31.15	■■■□□ 2.58
USF2-215	ENST00000602164	PTPDC1	A2A3K4	754 aa		31.14	■■■□□ 2.58
USF2-215	ENST00000602164	OPLAH	O14841	1288 aa		31.14	■■■□□ 2.58
USF2-215	ENST00000602164	CNGA1	P29973	690 aa		31.14	■■■□□ 2.58
USF2-215	ENST00000602164	RPS6	P62753	249 aa	Known RBP	31.14	■■■□□ 2.58
USF2-215	ENST00000602164	RNF207	Q6ZRF8	634 aa		31.14	■■■□□ 2.58
USF2-215	ENST00000602164		Q6ZUG5	572 aa		31.14	■■■□□ 2.58
USF2-215	ENST00000602164	SRBD1	Q8N5C6	995 aa	Known RBP	31.14	■■■□□ 2.58
USF2-215	ENST00000602164	LZTS2	Q9BRK4	669 aa		31.14	■■■□□ 2.58
USF2-215	ENST00000602164	MAF1	Q9H063	256 aa		31.14	■■■□□ 2.58
USF2-215	ENST00000602164	KATNBL1	Q9H079	304 aa		31.14	■■■□□ 2.58
USF2-215	ENST00000602164	ZSWIM6	Q9HCJ5	1215 aa		31.14	■■■□□ 2.58
USF2-215	ENST00000602164	MSC	O60682	206 aa		31.13	■■■□□ 2.57
USF2-215	ENST00000602164	FARP2	O94887	1054 aa	Predicted RBP	31.13	■■■□□ 2.57
USF2-215	ENST00000602164	GNAQ	P50148	359 aa		31.13	■■■□□ 2.57
USF2-215	ENST00000602164	TMTC3	Q6ZXV5	915 aa		31.13	■■■□□ 2.57
USF2-215	ENST00000602164	ANKLE1	Q8NAG6	615 aa		31.13	■■■□□ 2.57
USF2-215	ENST00000602164	TBC1D5	Q92609	795 aa		31.13	■■■□□ 2.57
USF2-215	ENST00000602164	TM6SF1	Q9BZW5	370 aa		31.13	■■■□□ 2.57
USF2-215	ENST00000602164	CNPY2	Q9Y2B0	182 aa		31.13	■■■□□ 2.57
USF2-215	ENST00000602164	MRPL11	Q9Y3B7	192 aa	Known RBP	31.13	■■■□□ 2.57
USF2-215	ENST00000602164	DDX49	Q9Y6V7	483 aa	Known RBP	31.13	■■■□□ 2.57
USF2-215	ENST00000602164	PNMA6F	A0A0J9YX94	578 aa		31.12	■■■□□ 2.57
USF2-215	ENST00000602164	KLF18	A0A0U1RQI7	1052 aa		31.12	■■■□□ 2.57
USF2-215	ENST00000602164	MORC4	Q8TE76	937 aa		31.12	■■■□□ 2.57
USF2-215	ENST00000602164	SEC24B	O95487	1268 aa		31.11	■■■□□ 2.57
USF2-215	ENST00000602164	CALML3	P27482	149 aa		31.11	■■■□□ 2.57
USF2-215	ENST00000602164	RCAN1	P53805	252 aa		31.11	■■■□□ 2.57
USF2-215	ENST00000602164	GHRHR	Q02643	423 aa		31.11	■■■□□ 2.57
USF2-215	ENST00000602164	RUFY3	Q7L099	469 aa		31.11	■■■□□ 2.57

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms