RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 AGBL1Q96MI9 1066 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 PPP1R12CQ9BZL4 782 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 HIPK3Q9H422 1215 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 SLC28A3Q9HAS3 691 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 EPB41L4AQ9HCS5 686 aaPredicted RBP11.33□□□□□ -0.6
VRK3-224ENST00000601849 IL23AQ9NPF7 189 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 A1CFQ9NQ94 594 aaKnown RBP11.33□□□□□ -0.6
VRK3-224ENST00000601849 GPHNQ9NQX3 736 aaPredicted RBP11.33□□□□□ -0.6
VRK3-224ENST00000601849 PLIN4Q96Q06 1357 aa11.32□□□□□ -0.6
VRK3-224ENST00000601849 BEX3Q00994 111 aa11.32□□□□□ -0.6
VRK3-224ENST00000601849 C20orf194Q5TEA3 1177 aa11.32□□□□□ -0.6
VRK3-224ENST00000601849 CXCL17Q6UXB2 119 aa11.32□□□□□ -0.6
VRK3-224ENST00000601849 KIAA1211Q6ZU35 1233 aa11.32□□□□□ -0.6
VRK3-224ENST00000601849 KCTD1Q719H9 257 aa11.32□□□□□ -0.6
VRK3-224ENST00000601849 DCAF4Q8WV16 495 aa11.32□□□□□ -0.6
VRK3-224ENST00000601849 VTA1Q9NP79 307 aa11.32□□□□□ -0.6
VRK3-224ENST00000601849 TOMM22Q9NS69 142 aa11.32□□□□□ -0.6
VRK3-224ENST00000601849 CCPG1Q9ULG6 757 aa11.32□□□□□ -0.6
VRK3-224ENST00000601849 PRR12Q9ULL5 1215 aa11.32□□□□□ -0.6
VRK3-224ENST00000601849 SPTBN5Q9NRC6 3674 aaKnown RBP11.31□□□□□ -0.6
VRK3-224ENST00000601849 PRUNE2Q8WUY3 3088 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 LOC102724159A0A0B4J2E5 919 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 SOWAHBA6NEL2 793 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 CD4P01730 458 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 ACRP10323 421 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 MX1P20591 662 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 CYP2C18P33260 490 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 CPT1AP50416 773 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 PWP2Q15269 919 aaKnown RBP11.31□□□□□ -0.6
VRK3-224ENST00000601849 CCDC96Q2M329 555 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 ZMYM1Q5SVZ6 1142 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 NSMFQ6X4W1 530 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 ATXN2LQ8WWM7 1075 aaKnown RBP11.31□□□□□ -0.6
VRK3-224ENST00000601849 PPM1EQ8WY54 764 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 HERVK_113Q902F9 699 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 CHMP4CQ96CF2 233 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 SEC62Q99442 399 aaKnown RBP11.31□□□□□ -0.6
VRK3-224ENST00000601849 PBX4Q9BYU1 374 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 POLR3EQ9NVU0 708 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 CYP39A1Q9NYL5 469 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 MTMR7Q9Y216 660 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 GNEQ9Y223 722 aaKnown RBP11.31□□□□□ -0.6
VRK3-224ENST00000601849 RAD50Q92878 1312 aa11.31□□□□□ -0.6
VRK3-224ENST00000601849 ICAM1P05362 532 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 IGFBP4P22692 258 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 AKNAD1Q5T1N1 836 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 C16orf59Q7L2K0 433 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 EEPD1Q7L9B9 569 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 TICAM2Q86XR7 235 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 SLC43A3Q8NBI5 491 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 EVI5LQ96CN4 794 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 FGD4Q96M96 766 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 KATNBL1Q9H079 304 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 PRDM6Q9NQX0 595 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 HELLSQ9NRZ9 838 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 SLC4A7Q9Y6M7 1214 aa11.3□□□□□ -0.6
VRK3-224ENST00000601849 GREB1LQ9C091 1923 aaPredicted RBP11.29□□□□□ -0.6
VRK3-224ENST00000601849 MYH4Q9Y623 1939 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.29□□□□□ -0.6
VRK3-224ENST00000601849 ADCY6O43306 1168 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 KPNA6O60684 536 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 PFKMP08237 780 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 TOP1P11387 765 aaKnown RBP11.29□□□□□ -0.6
VRK3-224ENST00000601849 ACTN1P12814 892 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 SMPD1P17405 629 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 CCL23P55773 120 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 IRX5P78411 483 aaPredicted RBP11.29□□□□□ -0.6
VRK3-224ENST00000601849 CTDSPL2Q05D32 466 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 RASIP1Q5U651 963 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 OTOP2Q7RTS6 562 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 PI4K2BQ8TCG2 481 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 TTC14Q96N46 770 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 WDR11Q9BZH6 1224 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 PRDM12Q9H4Q4 367 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 ANAPC4Q9UJX5 808 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 ZNF536O15090 1300 aa11.29□□□□□ -0.6
VRK3-224ENST00000601849 PTPDC1A2A3K4 754 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 ZBBXA8MT70 800 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 GRXCR1A8MXD5 290 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 TNFRSF10AO00220 468 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 NKRFO15226 690 aaKnown RBP eCLIP11.28□□□□□ -0.6
VRK3-224ENST00000601849 CTAGE5O15320 804 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 ORC4O43929 436 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 PCP11498 1178 aaKnown RBP11.28□□□□□ -0.6
VRK3-224ENST00000601849 MFAP1P55081 439 aaKnown RBP11.28□□□□□ -0.6
VRK3-224ENST00000601849 SNAP25P60880 206 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 MRPS5P82675 430 aaKnown RBP11.28□□□□□ -0.6
VRK3-224ENST00000601849 PDE4DQ08499 809 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 BAATQ14032 418 aaPredicted RBP11.28□□□□□ -0.6
VRK3-224ENST00000601849 ALX1Q15699 326 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 DUSP28Q4G0W2 176 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 MCMDC2Q4G0Z9 681 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 MUM1L1Q5H9M0 696 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 RRP12Q5JTH9 1297 aaKnown RBP11.28□□□□□ -0.6
VRK3-224ENST00000601849 ANKRD45Q5TZF3 282 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 TAPT1Q6NXT6 567 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 FBXO16Q8IX29 292 aaPredicted RBP11.28□□□□□ -0.6
VRK3-224ENST00000601849 RETREG2Q8NC44 543 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 RANBP17Q9H2T7 1088 aaKnown RBP11.28□□□□□ -0.6
VRK3-224ENST00000601849 PDGFCQ9NRA1 345 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms