RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 DHX32Q7L7V1 743 aaKnown RBP14.8□□□□□ -0.04
UPF1-208ENST00000600012 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.8□□□□□ -0.04
UPF1-208ENST00000600012 TSEN34Q9BSV6 310 aaKnown RBP14.8□□□□□ -0.04
UPF1-208ENST00000600012 SYNPO2Q9UMS6 1093 aa14.8□□□□□ -0.04
UPF1-208ENST00000600012 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.8□□□□□ -0.04
UPF1-208ENST00000600012 CTDP1Q9Y5B0 961 aaPredicted RBP14.8□□□□□ -0.04
UPF1-208ENST00000600012 DNAJC25-GNG10A0A024R161 153 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 IGKV6D-41A0A0C4DH26 115 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 KIAA0355O15063 1070 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 ZBED4O75132 1171 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 KDM4AO75164 1064 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 SLC3A2P08195 630 aaKnown RBP14.79□□□□□ -0.04
UPF1-208ENST00000600012 MCM5P33992 734 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 EXOSC10Q01780 885 aaKnown RBP14.79□□□□□ -0.04
UPF1-208ENST00000600012 MAMDC4Q6UXC1 1216 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.79□□□□□ -0.04
UPF1-208ENST00000600012 ZNF467Q7Z7K2 595 aaPredicted RBP14.79□□□□□ -0.04
UPF1-208ENST00000600012 ZNF444Q8N0Y2 327 aaPredicted RBP14.79□□□□□ -0.04
UPF1-208ENST00000600012 CPXCR1Q8N123 301 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 NUP133Q8WUM0 1156 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 LENG1Q96BZ8 264 aaPredicted RBP14.79□□□□□ -0.04
UPF1-208ENST00000600012 CNNM2Q9H8M5 875 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 CLIP2Q9UDT6 1046 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 DAXXQ9UER7 740 aaPredicted RBP14.79□□□□□ -0.04
UPF1-208ENST00000600012 FAM184BQ9ULE4 1060 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 SYNRGQ9UMZ2 1314 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 RIPK3Q9Y572 518 aa14.79□□□□□ -0.04
UPF1-208ENST00000600012 LAMA2P24043 3122 aaKnown RBP14.78□□□□□ -0.04
UPF1-208ENST00000600012 MOXD2PA6NHM9 499 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 PQBP1O60828 265 aaKnown RBP14.78□□□□□ -0.04
UPF1-208ENST00000600012 SNAI1O95863 264 aaPredicted RBP14.78□□□□□ -0.04
UPF1-208ENST00000600012 RAG1P15918 1043 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 MCM2P49736 904 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 ACLYP53396 1101 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 ANKRD33Q7Z3H0 272 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 SPRYD3Q8NCJ5 442 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 MKL1Q969V6 931 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 TOX2Q96NM4 488 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 CDX2Q99626 313 aaPredicted RBP14.78□□□□□ -0.04
UPF1-208ENST00000600012 KRT23Q9C075 422 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 SEMA6BQ9H3T3 888 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 SLC38A10Q9HBR0 1119 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 GPHNQ9NQX3 736 aaPredicted RBP14.78□□□□□ -0.04
UPF1-208ENST00000600012 STARD7Q9NQZ5 370 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 FBXO40Q9UH90 709 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 FEM1BQ9UK73 627 aa14.78□□□□□ -0.04
UPF1-208ENST00000600012 ZHX1Q9UKY1 873 aaPredicted RBP14.78□□□□□ -0.04
UPF1-208ENST00000600012 PLIN4Q96Q06 1357 aa14.77□□□□□ -0.04
UPF1-208ENST00000600012 DCDC2CA8MYV0 355 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 ORC4O43929 436 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 DUSP11O75319 330 aaKnown RBP14.77□□□□□ -0.05
UPF1-208ENST00000600012 LARGE1O95461 756 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 TTLL1O95922 423 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 FGRP09769 529 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 ITGB8P26012 769 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 OAZ1P54368 228 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 FGD1P98174 961 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 PDE4BQ07343 736 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 GMCL1P1Q8NEA9 526 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 KLHDC9Q8NEP7 349 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 CHST13Q8NET6 341 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 IL27Q8NEV9 243 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 BRF1Q92994 677 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 KIFC2Q96AC6 838 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 CEP95Q96GE4 821 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 RNPC3Q96LT9 517 aaKnown RBP14.77□□□□□ -0.05
UPF1-208ENST00000600012 ALDH8A1Q9H2A2 487 aaPredicted RBP14.77□□□□□ -0.05
UPF1-208ENST00000600012 TMEM39AQ9NV64 488 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 MTMR4Q9NYA4 1195 aa14.77□□□□□ -0.05
UPF1-208ENST00000600012 MROH7Q68CQ1 1323 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 WDR19Q8NEZ3 1342 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 TMEM265A0A087WTH1 108 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 RANBP6O60518 1105 aaKnown RBP14.76□□□□□ -0.05
UPF1-208ENST00000600012 FDX1P10109 184 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 PCP11498 1178 aaKnown RBP14.76□□□□□ -0.05
UPF1-208ENST00000600012 CST5P28325 142 aaPredicted RBP14.76□□□□□ -0.05
UPF1-208ENST00000600012 FPGSQ05932 587 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 ACVR2BQ13705 512 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 ANKRD1Q15327 319 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 LRRC47Q8N1G4 583 aaKnown RBP14.76□□□□□ -0.05
UPF1-208ENST00000600012 ANKRD35Q8N283 1001 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 ESR2Q92731 530 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 TMX3Q96JJ7 454 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 GLT1D1Q96MS3 346 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 ZKSCAN3Q9BRR0 538 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 ABHD16BQ9H3Z7 469 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 SPC25Q9HBM1 224 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 RAVER2Q9HCJ3 691 aaKnown RBP14.76□□□□□ -0.05
UPF1-208ENST00000600012 FOXD4L1Q9NU39 408 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.76□□□□□ -0.05
UPF1-208ENST00000600012 ZSWIM5Q9P217 1185 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 LIMCH1Q9UPQ0 1083 aa14.76□□□□□ -0.05
UPF1-208ENST00000600012 ELP1O95163 1332 aa14.75□□□□□ -0.05
UPF1-208ENST00000600012 SH2B2O14492 632 aaPredicted RBP14.75□□□□□ -0.05
UPF1-208ENST00000600012 TSPY3P0CV98 308 aa14.75□□□□□ -0.05
UPF1-208ENST00000600012 TSPY8P0CW00 308 aa14.75□□□□□ -0.05
UPF1-208ENST00000600012 EPHB4P54760 987 aa14.75□□□□□ -0.05
UPF1-208ENST00000600012 APOBRQ0VD83 1088 aa14.75□□□□□ -0.05
UPF1-208ENST00000600012 FAAP100Q0VG06 881 aa14.75□□□□□ -0.05
UPF1-208ENST00000600012 KCNA10Q16322 511 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms