RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SLC9A7Q96T83 725 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 Q9Y3F1 56 aa12.12□□□□□ -0.47
TRIM28-210ENST00000597618 TCF20Q9UGU0 1960 aaKnown RBP12.12□□□□□ -0.47
TRIM28-210ENST00000597618 DYNC1LI2O43237 492 aaPredicted RBP12.11□□□□□ -0.47
TRIM28-210ENST00000597618 TLL1O43897 1013 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 GPR37L1O60883 481 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 SUPT20HL2P0C7V6 817 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 SMPD1P17405 629 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 TTLL4Q14679 1199 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 SBK1Q52WX2 424 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 ZSCAN25Q6NSZ9 544 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 GMCL1P1Q8NEA9 526 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 VWCEQ96DN2 955 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 ALDH8A1Q9H2A2 487 aaPredicted RBP12.11□□□□□ -0.47
TRIM28-210ENST00000597618 BOLA2Q9H3K6 86 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 A1CFQ9NQ94 594 aaKnown RBP12.11□□□□□ -0.47
TRIM28-210ENST00000597618 CLIP2Q9UDT6 1046 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 COG6Q9Y2V7 657 aa12.11□□□□□ -0.47
TRIM28-210ENST00000597618 MCM3APO60318 1980 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 RFXAPO00287 272 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 ATP5JP18859 108 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 PSMC6P62333 389 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 TKFCQ3LXA3 575 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 IQSEC1Q6DN90 963 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 RPAP2Q8IXW5 612 aaPredicted RBP12.1□□□□□ -0.47
TRIM28-210ENST00000597618 PHOSPHO2Q8TCD6 241 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 ARNTL2Q8WYA1 636 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 MKL1Q969V6 931 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 HAUS7Q99871 368 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 CERS4Q9HA82 394 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 ZNF287Q9HBT7 754 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 RNF146Q9NTX7 359 aa12.1□□□□□ -0.47
TRIM28-210ENST00000597618 LRRC37A2A6NM11 1700 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 IGKV6D-41A0A0C4DH26 115 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 SOWAHBA6NEL2 793 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 EPOPA6NHQ4 379 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 TTLL1O95922 423 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 CHGBP05060 677 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 BMP3P12645 472 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 RFC2P35250 354 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 GIMAP6Q6P9H5 292 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 DEFB128Q7Z7B8 93 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 FBXO16Q8IX29 292 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-210ENST00000597618 PUS7LQ9H0K6 701 aaKnown RBP12.09□□□□□ -0.47
TRIM28-210ENST00000597618 VTA1Q9NP79 307 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 TRMT13Q9NUP7 481 aaKnown RBP12.09□□□□□ -0.47
TRIM28-210ENST00000597618 MTMR4Q9NYA4 1195 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 TNKSO95271 1327 aa12.09□□□□□ -0.47
TRIM28-210ENST00000597618 KIF28PB7ZC32 967 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 HMMRO75330 724 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 CYP2C9P11712 490 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 PTGS1P23219 599 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 STAT2P52630 851 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 TAP1Q03518 808 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 SLFN13Q68D06 897 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 KRT40Q6A162 431 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 TAPT1Q6NXT6 567 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 FAM160B2Q86V87 743 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 STK11IPQ8N1F8 1099 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 LRRC47Q8N1G4 583 aaKnown RBP12.08□□□□□ -0.48
TRIM28-210ENST00000597618 CEP95Q96GE4 821 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 STRBPQ96SI9 672 aaKnown RBP12.08□□□□□ -0.48
TRIM28-210ENST00000597618 BCL11AQ9H165 835 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 C11orf16Q9NQ32 467 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 PDGFCQ9NRA1 345 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 POLR3EQ9NVU0 708 aa12.08□□□□□ -0.48
TRIM28-210ENST00000597618 ISY1Q9ULR0 285 aaKnown RBP12.08□□□□□ -0.48
TRIM28-210ENST00000597618 PLIN4Q96Q06 1357 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 FAM86C2PA6NEL3 165 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 MINDY4BA8MYZ0 360 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 TMEM232C9JQI7 657 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 PITPNM1O00562 1244 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 RAB11FIP3O75154 756 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 CPT1AP50416 773 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 IKQ13123 557 aaPredicted RBP12.07□□□□□ -0.48
TRIM28-210ENST00000597618 GRB10Q13322 594 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 EEPD1Q7L9B9 569 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 HERC6Q8IVU3 1022 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 ZNF444Q8N0Y2 327 aaPredicted RBP12.07□□□□□ -0.48
TRIM28-210ENST00000597618 CHURC1Q8WUH1 139 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 TRERF1Q96PN7 1200 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 CYP39A1Q9NYL5 469 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 ZNF536O15090 1300 aa12.07□□□□□ -0.48
TRIM28-210ENST00000597618 GSG1L2A8MUP6 293 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 PI4K2BG5E9Z4 385 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 PRDM1O75626 825 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 BAIAP3O94812 1187 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 ALAS1P13196 640 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 PURAQ00577 322 aaKnown RBP12.06□□□□□ -0.48
TRIM28-210ENST00000597618 DUSP28Q4G0W2 176 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 KIAA1211Q6ZU35 1233 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 RETREG2Q8NC44 543 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 STAG1Q8WVM7 1258 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 KHSRPQ92945 711 aaKnown RBP eCLIP12.06□□□□□ -0.48
TRIM28-210ENST00000597618 GMCL1Q96IK5 515 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 MTG1Q9BT17 334 aaPredicted RBP12.06□□□□□ -0.48
TRIM28-210ENST00000597618 FTOQ9C0B1 505 aaKnown RBP eCLIP12.06□□□□□ -0.48
TRIM28-210ENST00000597618 GPHNQ9NQX3 736 aaPredicted RBP12.06□□□□□ -0.48
TRIM28-210ENST00000597618 LMCD1Q9NZU5 365 aa12.06□□□□□ -0.48
TRIM28-210ENST00000597618 DDX49Q9Y6V7 483 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 138.2 ms