RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 CALM3P0DP25 149 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 PRKAR2AP13861 404 aaKnown RBP12.89□□□□□ -0.35
LIG1-211ENST00000596457 RPS6KB1P23443 525 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 CNGA1P29973 690 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 KIF5BP33176 963 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 CYP2C19P33261 490 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 APOBRQ0VD83 1088 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 QRICH1Q2TAL8 776 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 MICU3Q86XE3 530 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 CMTR1Q8N1G2 835 aaKnown RBP12.89□□□□□ -0.35
LIG1-211ENST00000596457 CCDC82Q8N4S0 544 aa12.89□□□□□ -0.35
LIG1-211ENST00000596457 HMX1Q9NP08 348 aaPredicted RBP12.89□□□□□ -0.35
LIG1-211ENST00000596457 WDR19Q8NEZ3 1342 aa12.88□□□□□ -0.35
LIG1-211ENST00000596457 PTPDC1A2A3K4 754 aa12.88□□□□□ -0.35
LIG1-211ENST00000596457 EIF5BO60841 1220 aaKnown RBP12.88□□□□□ -0.35
LIG1-211ENST00000596457 GJA8P48165 433 aa12.88□□□□□ -0.35
LIG1-211ENST00000596457 CNTN2Q02246 1040 aa12.88□□□□□ -0.35
LIG1-211ENST00000596457 CACNB2Q08289 660 aaPredicted RBP12.88□□□□□ -0.35
LIG1-211ENST00000596457 PRAMEF19Q5SWL8 479 aa12.88□□□□□ -0.35
LIG1-211ENST00000596457 FBXO11Q86XK2 927 aa12.88□□□□□ -0.35
LIG1-211ENST00000596457 BRF1Q92994 677 aa12.88□□□□□ -0.35
LIG1-211ENST00000596457 MAML3Q96JK9 1138 aa12.88□□□□□ -0.35
LIG1-211ENST00000596457 PIGSQ96S52 555 aa12.88□□□□□ -0.35
LIG1-211ENST00000596457 BRPF3Q9ULD4 1205 aa12.88□□□□□ -0.35
LIG1-211ENST00000596457 CYP46A1Q9Y6A2 500 aa12.88□□□□□ -0.35
LIG1-211ENST00000596457 GOLGA8AA7E2F4 631 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 GOLGA8BA8MQT2 603 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 POTEB2H3BUK9 544 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 NFIBO00712 420 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 ZBTB43O43298 467 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 PLEKHA8P1O95397 391 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 HOXC6P09630 235 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 CCND3P30281 292 aaPredicted RBP12.87□□□□□ -0.35
LIG1-211ENST00000596457 MNX1P50219 401 aaPredicted RBP12.87□□□□□ -0.35
LIG1-211ENST00000596457 ZNF792Q3KQV3 632 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 APOA5Q6Q788 366 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 RUFY3Q7L099 469 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 FANCBQ8NB91 859 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 DEFB118Q96PH6 123 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 MAP3K14Q99558 947 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 LARP6Q9BRS8 491 aaKnown RBP12.87□□□□□ -0.35
LIG1-211ENST00000596457 UPF3BQ9BZI7 483 aaKnown RBP12.87□□□□□ -0.35
LIG1-211ENST00000596457 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.87□□□□□ -0.35
LIG1-211ENST00000596457 A1CFQ9NQ94 594 aaKnown RBP12.87□□□□□ -0.35
LIG1-211ENST00000596457 RPTORQ8N122 1335 aa12.87□□□□□ -0.35
LIG1-211ENST00000596457 ZBTB5O15062 677 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 CYTH3O43739 400 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 TFRCP02786 760 aaKnown RBP12.86□□□□□ -0.35
LIG1-211ENST00000596457 CALML3P27482 149 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 GNAQP50148 359 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 BAATQ14032 418 aaPredicted RBP12.86□□□□□ -0.35
LIG1-211ENST00000596457 SLC35G1Q2M3R5 365 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 C8orf34Q49A92 452 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 SGMS1Q86VZ5 419 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 SRBD1Q8N5C6 995 aaKnown RBP12.86□□□□□ -0.35
LIG1-211ENST00000596457 PURBQ96QR8 312 aaKnown RBP12.86□□□□□ -0.35
LIG1-211ENST00000596457 AMNQ9BXJ7 453 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 RIOX1Q9H6W3 641 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 ZSWIM6Q9HCJ5 1215 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 PDRG1Q9NUG6 133 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 PNMA2Q9UL42 364 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 PFASO15067 1338 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 ABCB11O95342 1321 aa12.86□□□□□ -0.35
LIG1-211ENST00000596457 BAZ2BQ9UIF8 2168 aaKnown RBP12.86□□□□□ -0.35
LIG1-211ENST00000596457 hCG_1642624A0A1W2PR95 340 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 SGPL1O95470 568 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 RTN1Q16799 776 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 ANO1Q5XXA6 986 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 OLFML2BQ68BL8 750 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 RNF207Q6ZRF8 634 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 CLEC4DQ8WXI8 215 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 TBC1D5Q92609 795 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 RRP36Q96EU6 259 aaKnown RBP12.85□□□□□ -0.35
LIG1-211ENST00000596457 LZTS2Q9BRK4 669 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 TINF2Q9BSI4 451 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 CYP39A1Q9NYL5 469 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 SEC63Q9UGP8 760 aaKnown RBP12.85□□□□□ -0.35
LIG1-211ENST00000596457 DIS3Q9Y2L1 958 aaKnown RBP12.85□□□□□ -0.35
LIG1-211ENST00000596457 MRPL11Q9Y3B7 192 aaKnown RBP12.85□□□□□ -0.35
LIG1-211ENST00000596457 PCDHA1Q9Y5I3 950 aa12.85□□□□□ -0.35
LIG1-211ENST00000596457 CEP290O15078 2479 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 MCM3APO60318 1980 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 DNAJC25-GNG10A0A024R161 153 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 PNMA6FA0A0J9YX94 578 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 SOWAHBA6NEL2 793 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 PPP1R11O60927 126 aaPredicted RBP12.84□□□□□ -0.35
LIG1-211ENST00000596457 CFBP00751 764 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 METAP2P50579 478 aaKnown RBP eCLIP12.84□□□□□ -0.35
LIG1-211ENST00000596457 CCT2P78371 535 aaKnown RBP12.84□□□□□ -0.35
LIG1-211ENST00000596457 SLC30A10Q6XR72 485 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.84□□□□□ -0.35
LIG1-211ENST00000596457 TRPV1Q8NER1 839 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 U2AF1L4Q8WU68 220 aaKnown RBP12.84□□□□□ -0.35
LIG1-211ENST00000596457 MTMR8Q96EF0 704 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 HTATIP2Q9BUP3 242 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 TM6SF1Q9BZW5 370 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 RBM28Q9NW13 759 aaKnown RBP12.84□□□□□ -0.35
LIG1-211ENST00000596457 DDX49Q9Y6V7 483 aaKnown RBP12.84□□□□□ -0.35
LIG1-211ENST00000596457 LCTP09848 1927 aa12.84□□□□□ -0.35
LIG1-211ENST00000596457 MYCNP04198 464 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms