RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 PRKCZQ05513 592 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 ZNF792Q3KQV3 632 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 TKFCQ3LXA3 575 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 WWC2Q6AWC2 1192 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 NCAPG2Q86XI2 1143 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 FBXO11Q86XK2 927 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 HOMER1Q86YM7 354 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 RGS22Q8NE09 1264 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 NSUN7Q8NE18 718 aaKnown RBP12.26□□□□□ -0.45
LIG1-210ENST00000596332 CHST13Q8NET6 341 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 PIBF1Q8WXW3 757 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 A1CFQ9NQ94 594 aaKnown RBP12.26□□□□□ -0.45
LIG1-210ENST00000596332 RNF146Q9NTX7 359 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 FLRT1Q9NZU1 646 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 COL20A1Q9P218 1284 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 CCPG1Q9ULG6 757 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 ISY1Q9ULR0 285 aaKnown RBP12.26□□□□□ -0.45
LIG1-210ENST00000596332 SOWAHBA6NEL2 793 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 SLC15A5A6NIM6 579 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 STRNO43815 780 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 FMNL1O95466 1100 aaPredicted RBP12.25□□□□□ -0.45
LIG1-210ENST00000596332 FLT3LGP49771 235 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 FCGRTP55899 365 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 CCNA1P78396 465 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 CNTN2Q02246 1040 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 NPY5RQ15761 445 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 CCL14Q16627 93 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 PFKFB3Q16875 520 aaPredicted RBP12.25□□□□□ -0.45
LIG1-210ENST00000596332 USH1GQ495M9 461 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 COL13A1Q5TAT6 717 aaPredicted RBP12.25□□□□□ -0.45
LIG1-210ENST00000596332 ABRAQ8N0Z2 381 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 FAM133AQ8N9E0 248 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 IL27Q8NEV9 243 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 SMARCC2Q8TAQ2 1214 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 RRP36Q96EU6 259 aaKnown RBP12.25□□□□□ -0.45
LIG1-210ENST00000596332 TMX3Q96JJ7 454 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 AIFM3Q96NN9 605 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 AMNQ9BXJ7 453 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 SLKQ9H2G2 1235 aaPredicted RBP12.25□□□□□ -0.45
LIG1-210ENST00000596332 CYP39A1Q9NYL5 469 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 NAP1L2Q9ULW6 460 aaPredicted RBP12.25□□□□□ -0.45
LIG1-210ENST00000596332 PTPN22Q9Y2R2 807 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 PCDHA1Q9Y5I3 950 aa12.25□□□□□ -0.45
LIG1-210ENST00000596332 CCDC196A0A1B0GTZ2 297 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 STXBP3O00186 592 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 MEIS2O14770 477 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 TNPO2O14787 897 aaKnown RBP12.24□□□□□ -0.45
LIG1-210ENST00000596332 JAK2O60674 1132 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 GNRH1P01148 92 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 PGK2P07205 417 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 ADORA2AP29274 412 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 SLC4A3P48751 1232 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 MAP2K5Q13163 448 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 IRF5Q13568 498 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 BAATQ14032 418 aaPredicted RBP12.24□□□□□ -0.45
LIG1-210ENST00000596332 GPKOWQ92917 476 aaPredicted RBP eCLIP12.24□□□□□ -0.45
LIG1-210ENST00000596332 RNF26Q9BY78 433 aaPredicted RBP12.24□□□□□ -0.45
LIG1-210ENST00000596332 HOMER2Q9NSB8 354 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 GJB4Q9NTQ9 266 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 TRIM17Q9Y577 477 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 PTCH2Q9Y6C5 1203 aa12.24□□□□□ -0.45
LIG1-210ENST00000596332 DDX49Q9Y6V7 483 aaKnown RBP12.24□□□□□ -0.45
LIG1-210ENST00000596332 LCTP09848 1927 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 ZNF236Q9UL36 1845 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 ABCB11O95342 1321 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 EDIL3O43854 480 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 DHX16O60231 1041 aaKnown RBP12.23□□□□□ -0.45
LIG1-210ENST00000596332 XRCC5P13010 732 aaKnown RBP12.23□□□□□ -0.45
LIG1-210ENST00000596332 COPB2P35606 906 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 HSD17B4P51659 736 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 TRIM32Q13049 653 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 CUL4AQ13619 759 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 SLC30A10Q6XR72 485 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 CTU1Q7Z7A3 348 aaKnown RBP12.23□□□□□ -0.45
LIG1-210ENST00000596332 CCDC83Q8IWF9 413 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 SYTL5Q8TDW5 730 aaPredicted RBP12.23□□□□□ -0.45
LIG1-210ENST00000596332 SNX21Q969T3 373 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 ZSCAN31Q96LW9 406 aaPredicted RBP12.23□□□□□ -0.45
LIG1-210ENST00000596332 ACAD9Q9H845 621 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 BARHL2Q9NY43 387 aa12.23□□□□□ -0.45
LIG1-210ENST00000596332 FCER1AP12319 257 aa12.22□□□□□ -0.45
LIG1-210ENST00000596332 SCG2P13521 617 aa12.22□□□□□ -0.45
LIG1-210ENST00000596332 RPS6P62753 249 aaKnown RBP12.22□□□□□ -0.45
LIG1-210ENST00000596332 KIF22Q14807 665 aa12.22□□□□□ -0.45
LIG1-210ENST00000596332 MORC4Q8TE76 937 aa12.22□□□□□ -0.45
LIG1-210ENST00000596332 TRIB2Q92519 343 aa12.22□□□□□ -0.45
LIG1-210ENST00000596332 MMP19Q99542 508 aa12.22□□□□□ -0.45
LIG1-210ENST00000596332 NUDT12Q9BQG2 462 aa12.22□□□□□ -0.45
LIG1-210ENST00000596332 SLC26A6Q9BXS9 759 aa12.22□□□□□ -0.45
LIG1-210ENST00000596332 FBXO40Q9UH90 709 aa12.22□□□□□ -0.45
LIG1-210ENST00000596332 STK36Q9NRP7 1315 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 M0R2N6 131 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 ST18O60284 1047 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 ELNP15502 786 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 CYP2B6P20813 491 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 CLK2P49760 499 aaKnown RBP12.21□□□□□ -0.45
LIG1-210ENST00000596332 PRMT2P55345 433 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 MAP3K21Q5TCX8 1036 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 USP17L6PQ6QN14 398 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 MAMDC4Q6UXC1 1216 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms