RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 WTAPQ15007 396 aa20.7■□□□□ 0.9
SHKBP1-204ENST00000594862 LRRC41Q15345 812 aa20.7■□□□□ 0.9
SHKBP1-204ENST00000594862 RNF20Q5VTR2 975 aa20.7■□□□□ 0.9
SHKBP1-204ENST00000594862 CCDC144CPQ8IYA2 1237 aa20.7■□□□□ 0.9
SHKBP1-204ENST00000594862 LSG1Q9H089 658 aaKnown RBP20.7■□□□□ 0.9
SHKBP1-204ENST00000594862 SPC25Q9HBM1 224 aa20.7■□□□□ 0.9
SHKBP1-204ENST00000594862 ANO2Q9NQ90 1003 aa20.7■□□□□ 0.9
SHKBP1-204ENST00000594862 ABCB11O95342 1321 aa20.7■□□□□ 0.9
SHKBP1-204ENST00000594862 B4DLN1 442 aa20.69■□□□□ 0.9
SHKBP1-204ENST00000594862 DUSP11O75319 330 aaKnown RBP20.69■□□□□ 0.9
SHKBP1-204ENST00000594862 TAL1P17542 331 aaPredicted RBP20.69■□□□□ 0.9
SHKBP1-204ENST00000594862 MRPL12P52815 198 aaKnown RBP20.69■□□□□ 0.9
SHKBP1-204ENST00000594862 CNTN2Q02246 1040 aa20.69■□□□□ 0.9
SHKBP1-204ENST00000594862 CDC37Q16543 378 aaPredicted RBP20.69■□□□□ 0.9
SHKBP1-204ENST00000594862 GJC2Q5T442 439 aaPredicted RBP20.69■□□□□ 0.9
SHKBP1-204ENST00000594862 ANO1Q5XXA6 986 aa20.69■□□□□ 0.9
SHKBP1-204ENST00000594862 RNF207Q6ZRF8 634 aa20.69■□□□□ 0.9
SHKBP1-204ENST00000594862 RGS22Q8NE09 1264 aa20.69■□□□□ 0.9
SHKBP1-204ENST00000594862 LRRC37A2A6NM11 1700 aa20.69■□□□□ 0.9
SHKBP1-204ENST00000594862 PTPDC1A2A3K4 754 aa20.68■□□□□ 0.9
SHKBP1-204ENST00000594862 SOWAHBA6NEL2 793 aa20.68■□□□□ 0.9
SHKBP1-204ENST00000594862 MYCNP04198 464 aaPredicted RBP20.68■□□□□ 0.9
SHKBP1-204ENST00000594862 ADGRF4Q8IZF3 695 aa20.68■□□□□ 0.9
SHKBP1-204ENST00000594862 TSEN34Q9BSV6 310 aaKnown RBP20.68■□□□□ 0.9
SHKBP1-204ENST00000594862 PHF24Q9UPV7 400 aa20.68■□□□□ 0.9
SHKBP1-204ENST00000594862 MCM3APO60318 1980 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 A0A1W2PPC1 479 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 NFIBO00712 420 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 BAATQ14032 418 aaPredicted RBP20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 LRRC26Q2I0M4 334 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 CCDC144BQ3MJ40 725 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 TMEM67Q5HYA8 995 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 CHRDL2Q6WN34 429 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 STOX1Q6ZVD7 989 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 CATIPQ7Z7H3 387 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 MCF2L2Q86YR7 1114 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 MB21D2Q8IYB1 491 aaPredicted RBP20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 CLEC4DQ8WXI8 215 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 UBA5Q9GZZ9 404 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 VTA1Q9NP79 307 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 SYNRGQ9UMZ2 1314 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 LAMA3Q16787 3333 aa20.67■□□□□ 0.9
SHKBP1-204ENST00000594862 MOXD2PA6NHM9 499 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 KLRF2D3W0D1 207 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 ADAMTS4O75173 837 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 CST5P28325 142 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 MCM5P33992 734 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 GRM4Q14833 912 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 C1orf53Q5VUE5 145 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 ERICH6BQ5W0A0 696 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 TMTC2Q8N394 836 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 DNERQ8NFT8 737 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 MORC4Q8TE76 937 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 TMEM87BQ96K49 555 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 RBM27Q9P2N5 1060 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 SMCHD1A6NHR9 2005 aa20.66■□□□□ 0.9
SHKBP1-204ENST00000594862 LCTP09848 1927 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 MYH6P13533 1939 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 SLC27A2O14975 620 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 PGK1P00558 417 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 ALDH5A1P51649 535 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 SNX17Q15036 470 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 NECTIN1Q15223 517 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 USH1GQ495M9 461 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 CREB3L3Q68CJ9 461 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 FBXO11Q86XK2 927 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 PCSK9Q8NBP7 692 aaKnown RBP20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 NUP133Q8WUM0 1156 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 MAP3K14Q99558 947 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 AMNQ9BXJ7 453 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 KATNBL1Q9H079 304 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 UPF3AQ9H1J1 476 aaKnown RBP20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 JMJD4Q9H9V9 463 aa20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 MRPL11Q9Y3B7 192 aaKnown RBP20.65■□□□□ 0.9
SHKBP1-204ENST00000594862 PALM3A6NDB9 673 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 DDAH1O94760 285 aa20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 CALML3P27482 149 aa20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 ADCYAP1R1P41586 468 aa20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 RPS6P62753 249 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 QRICH1Q2TAL8 776 aa20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 SLC30A10Q6XR72 485 aa20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 PRO3102Q9H379 93 aa20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 CPVLQ9H3G5 476 aa20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 PRKAG2Q9UGJ0 569 aa20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 MAD2L2Q9UI95 211 aa20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 TAF6LQ9Y6J9 622 aa20.64■□□□□ 0.89
SHKBP1-204ENST00000594862 ZBTB5O15062 677 aa20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 PRC1O43663 620 aa20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 CENPBP07199 599 aaPredicted RBP20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 KIF5BP33176 963 aa20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 ATN1P54259 1190 aaPredicted RBP20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 GJA9P57773 515 aa20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 RTP1P59025 263 aa20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 NKX3-2P78367 333 aa20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 TNFAIP2Q03169 654 aa20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 TROAPQ12815 778 aa20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 IQSEC1Q6DN90 963 aa20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 SLC39A5Q6ZMH5 540 aa20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 SAMD3Q8N6K7 520 aa20.63■□□□□ 0.89
SHKBP1-204ENST00000594862 IGDCC4Q8TDY8 1250 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms