RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 MAF1Q9H063 256 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 A1CFQ9NQ94 594 aaKnown RBP17.47■□□□□ 0.39
UPF1-202ENST00000594243 HTTP42858 3142 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 POTEB2H3BUK9 544 aa17.46■□□□□ 0.39
UPF1-202ENST00000594243 ZBTB5O15062 677 aa17.46■□□□□ 0.39
UPF1-202ENST00000594243 CASTP20810 708 aaKnown RBP17.46■□□□□ 0.39
UPF1-202ENST00000594243 RPS6KB1P23443 525 aa17.46■□□□□ 0.39
UPF1-202ENST00000594243 USH1GQ495M9 461 aa17.46■□□□□ 0.39
UPF1-202ENST00000594243 NSMFQ6X4W1 530 aa17.46■□□□□ 0.39
UPF1-202ENST00000594243 FANCBQ8NB91 859 aa17.46■□□□□ 0.39
UPF1-202ENST00000594243 U2AF1L4Q8WU68 220 aaKnown RBP17.46■□□□□ 0.39
UPF1-202ENST00000594243 MTMR8Q96EF0 704 aa17.46■□□□□ 0.39
UPF1-202ENST00000594243 TCEANC2Q96MN5 208 aa17.46■□□□□ 0.39
UPF1-202ENST00000594243 DEFB118Q96PH6 123 aa17.46■□□□□ 0.39
UPF1-202ENST00000594243 AMNQ9BXJ7 453 aa17.46■□□□□ 0.39
UPF1-202ENST00000594243 CYP39A1Q9NYL5 469 aa17.46■□□□□ 0.39
UPF1-202ENST00000594243 ABCB11O95342 1321 aa17.46■□□□□ 0.38
UPF1-202ENST00000594243 TFRCP02786 760 aaKnown RBP17.45■□□□□ 0.38
UPF1-202ENST00000594243 MAMDC4Q6UXC1 1216 aa17.45■□□□□ 0.38
UPF1-202ENST00000594243 Q6ZUG5 572 aa17.45■□□□□ 0.38
UPF1-202ENST00000594243 RUFY3Q7L099 469 aa17.45■□□□□ 0.38
UPF1-202ENST00000594243 FBXL16Q8N461 479 aa17.45■□□□□ 0.38
UPF1-202ENST00000594243 RGS22Q8NE09 1264 aa17.45■□□□□ 0.38
UPF1-202ENST00000594243 TM6SF1Q9BZW5 370 aa17.45■□□□□ 0.38
UPF1-202ENST00000594243 ZSWIM6Q9HCJ5 1215 aa17.45■□□□□ 0.38
UPF1-202ENST00000594243 NRBP1Q9UHY1 535 aa17.45■□□□□ 0.38
UPF1-202ENST00000594243 MRPL11Q9Y3B7 192 aaKnown RBP17.45■□□□□ 0.38
UPF1-202ENST00000594243 PNMA6FA0A0J9YX94 578 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 NFIBO00712 420 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 ZBTB43O43298 467 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 MSCO60682 206 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 CPA1P15085 419 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 CNGA1P29973 690 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 CCND3P30281 292 aaPredicted RBP17.44■□□□□ 0.38
UPF1-202ENST00000594243 APOA5Q6Q788 366 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 RNF207Q6ZRF8 634 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 HOMER1Q86YM7 354 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 MCF2L2Q86YR7 1114 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 FAM133AQ8N9E0 248 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 CLEC4DQ8WXI8 215 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 PIGSQ96S52 555 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 SPZ1Q9BXG8 430 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 RBM28Q9NW13 759 aaKnown RBP17.44■□□□□ 0.38
UPF1-202ENST00000594243 CYP46A1Q9Y6A2 500 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 SYNGAP1Q96PV0 1343 aa17.44■□□□□ 0.38
UPF1-202ENST00000594243 ZNFX1Q9P2E3 1918 aaKnown RBP17.43■□□□□ 0.38
UPF1-202ENST00000594243 KLF18A0A0U1RQI7 1052 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 PTPDC1A2A3K4 754 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 CYTH3O43739 400 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 CYBAP13498 195 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 TAL1P17542 331 aaPredicted RBP17.43■□□□□ 0.38
UPF1-202ENST00000594243 RXRAP19793 462 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 RCAN1P53805 252 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 ANAPC15P60006 121 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 CNTN2Q02246 1040 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 BAATQ14032 418 aaPredicted RBP17.43■□□□□ 0.38
UPF1-202ENST00000594243 PPP2R5BQ15173 497 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 MICU3Q86XE3 530 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 CCDC144CPQ8IYA2 1237 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 RRP36Q96EU6 259 aaKnown RBP17.43■□□□□ 0.38
UPF1-202ENST00000594243 ADD3Q9UEY8 706 aaKnown RBP17.43■□□□□ 0.38
UPF1-202ENST00000594243 BRPF3Q9ULD4 1205 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 CNPY2Q9Y2B0 182 aa17.43■□□□□ 0.38
UPF1-202ENST00000594243 RBBP6Q7Z6E9 1792 aaKnown RBP17.43■□□□□ 0.38
UPF1-202ENST00000594243 ASB14A6NK59 587 aa17.42■□□□□ 0.38
UPF1-202ENST00000594243 PRAMEF19Q5SWL8 479 aa17.42■□□□□ 0.38
UPF1-202ENST00000594243 BRF1Q92994 677 aa17.42■□□□□ 0.38
UPF1-202ENST00000594243 AGXT2Q9BYV1 514 aa17.42■□□□□ 0.38
UPF1-202ENST00000594243 CRISPLD2Q9H0B8 497 aa17.42■□□□□ 0.38
UPF1-202ENST00000594243 SEC63Q9UGP8 760 aaKnown RBP17.42■□□□□ 0.38
UPF1-202ENST00000594243 PCDHA1Q9Y5I3 950 aa17.42■□□□□ 0.38
UPF1-202ENST00000594243 LOC102724159A0A0B4J2E5 919 aa17.41■□□□□ 0.38
UPF1-202ENST00000594243 SOWAHBA6NEL2 793 aa17.41■□□□□ 0.38
UPF1-202ENST00000594243 SEPT4O43236 478 aa17.41■□□□□ 0.38
UPF1-202ENST00000594243 CALML3P27482 149 aa17.41■□□□□ 0.38
UPF1-202ENST00000594243 PWP2Q15269 919 aaKnown RBP17.41■□□□□ 0.38
UPF1-202ENST00000594243 SLC35G1Q2M3R5 365 aa17.41■□□□□ 0.38
UPF1-202ENST00000594243 RAB11FIP4Q86YS3 637 aa17.41■□□□□ 0.38
UPF1-202ENST00000594243 SRBD1Q8N5C6 995 aaKnown RBP17.41■□□□□ 0.38
UPF1-202ENST00000594243 SAMD3Q8N6K7 520 aa17.41■□□□□ 0.38
UPF1-202ENST00000594243 ANKLE1Q8NAG6 615 aa17.41■□□□□ 0.38
UPF1-202ENST00000594243 TRPV1Q8NER1 839 aa17.41■□□□□ 0.38
UPF1-202ENST00000594243 MPHOSPH6Q99547 160 aaKnown RBP17.41■□□□□ 0.38
UPF1-202ENST00000594243 MAP3K20Q9NYL2 800 aaKnown RBP17.41■□□□□ 0.38
UPF1-202ENST00000594243 DDX20Q9UHI6 824 aaKnown RBP17.41■□□□□ 0.38
UPF1-202ENST00000594243 NAP1L2Q9ULW6 460 aaPredicted RBP17.41■□□□□ 0.38
UPF1-202ENST00000594243 CCDC196A0A1B0GTZ2 297 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 GOLGA8AA7E2F4 631 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 GOLGA8BA8MQT2 603 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 B4DLN1 442 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 PLEKHA8P1O95397 391 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 SEC24BO95487 1268 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 SNAI1O95863 264 aaPredicted RBP17.4■□□□□ 0.38
UPF1-202ENST00000594243 MRPL12P52815 198 aaKnown RBP17.4■□□□□ 0.38
UPF1-202ENST00000594243 RPS6P62753 249 aaKnown RBP17.4■□□□□ 0.38
UPF1-202ENST00000594243 APOBRQ0VD83 1088 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 RTN1Q16799 776 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 LHX8Q68G74 356 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 TMTC3Q6ZXV5 915 aa17.4■□□□□ 0.38
UPF1-202ENST00000594243 ARMCX2Q7L311 632 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms