RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PPP1R13BQ96KQ4 1090 aa22.22■■□□□ 1.15
CLIP3-206ENST00000593074 PRMT6Q96LA8 375 aaPredicted RBP22.22■■□□□ 1.15
CLIP3-206ENST00000593074 KIF2AO00139 706 aaPredicted RBP22.21■■□□□ 1.15
CLIP3-206ENST00000593074 PTPN21Q16825 1174 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 JAKMIP3Q5VZ66 844 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 TMEM139Q8IV31 216 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 LARGE2Q8N3Y3 721 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 RASSF8Q8NHQ8 419 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 COA7Q96BR5 231 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 MTMR8Q96EF0 704 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 CTAGE1Q96RT6 745 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 TMEM260Q9NX78 707 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 CTIFO43310 598 aaKnown RBP22.21■■□□□ 1.15
CLIP3-206ENST00000593074 PAK1Q13153 545 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 KCNB1Q14721 858 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 RSBN1LQ6PCB5 846 aaPredicted RBP22.21■■□□□ 1.15
CLIP3-206ENST00000593074 FBXO41Q8TF61 875 aa22.21■■□□□ 1.15
CLIP3-206ENST00000593074 FAM196BA6NMK8 535 aa22.2■■□□□ 1.14
CLIP3-206ENST00000593074 TATDN1Q6P1N9 297 aa22.2■■□□□ 1.14
CLIP3-206ENST00000593074 CABP7Q86V35 215 aa22.2■■□□□ 1.14
CLIP3-206ENST00000593074 LRRC15Q8TF66 581 aa22.2■■□□□ 1.14
CLIP3-206ENST00000593074 KANSL2Q9H9L4 492 aa22.2■■□□□ 1.14
CLIP3-206ENST00000593074 RIC8AQ9NPQ8 531 aa22.2■■□□□ 1.14
CLIP3-206ENST00000593074 ADD3Q9UEY8 706 aaKnown RBP22.2■■□□□ 1.14
CLIP3-206ENST00000593074 PPP1R11O60927 126 aaPredicted RBP22.19■■□□□ 1.14
CLIP3-206ENST00000593074 FCHSD1Q86WN1 690 aa22.19■■□□□ 1.14
CLIP3-206ENST00000593074 IGSF22Q8N9C0 903 aa22.19■■□□□ 1.14
CLIP3-206ENST00000593074 VPS33BQ9H267 617 aa22.19■■□□□ 1.14
CLIP3-206ENST00000593074 ZNF277Q9NRM2 450 aaPredicted RBP22.19■■□□□ 1.14
CLIP3-206ENST00000593074 RRP9O43818 475 aaKnown RBP22.19■■□□□ 1.14
CLIP3-206ENST00000593074 TTBK2Q6IQ55 1244 aa22.19■■□□□ 1.14
CLIP3-206ENST00000593074 POTEDQ86YR6 584 aa22.19■■□□□ 1.14
CLIP3-206ENST00000593074 TC2NQ8N9U0 490 aa22.19■■□□□ 1.14
CLIP3-206ENST00000593074 MKL1Q969V6 931 aa22.19■■□□□ 1.14
CLIP3-206ENST00000593074 MTMR9Q96QG7 549 aa22.19■■□□□ 1.14
CLIP3-206ENST00000593074 NYAP2Q9P242 653 aa22.19■■□□□ 1.14
CLIP3-206ENST00000593074 CCP110O43303 1012 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 KLRC4O43908 158 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 RAD17O75943 681 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 VIL1P09327 827 aaKnown RBP22.18■■□□□ 1.14
CLIP3-206ENST00000593074 PLCG1P19174 1290 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 PBX1P40424 430 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 GOLGA8FQ08AF8 430 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 GOLGA8DPQ0D2H9 430 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 CCDC96Q2M329 555 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 ZBTB5O15062 677 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 EDIL3O43854 480 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 CLK2P49760 499 aaKnown RBP22.18■■□□□ 1.14
CLIP3-206ENST00000593074 RBM10P98175 930 aaKnown RBP22.18■■□□□ 1.14
CLIP3-206ENST00000593074 NELFBQ8WX92 580 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 TMOD2Q9NZR1 351 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 HDAC9Q9UKV0 1011 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 GDAQ9Y2T3 454 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 ATRNL1Q5VV63 1379 aa22.18■■□□□ 1.14
CLIP3-206ENST00000593074 COL2A1P02458 1487 aaPredicted RBP22.17■■□□□ 1.14
CLIP3-206ENST00000593074 PSMD14O00487 310 aa22.17■■□□□ 1.14
CLIP3-206ENST00000593074 ARHGAP6O43182 974 aa22.17■■□□□ 1.14
CLIP3-206ENST00000593074 RHOBTB3O94955 611 aa22.17■■□□□ 1.14
CLIP3-206ENST00000593074 EEF2P13639 858 aaKnown RBP22.17■■□□□ 1.14
CLIP3-206ENST00000593074 PRCPP42785 496 aa22.17■■□□□ 1.14
CLIP3-206ENST00000593074 ADSSL1Q8N142 457 aa22.17■■□□□ 1.14
CLIP3-206ENST00000593074 LIMA1Q9UHB6 759 aaKnown RBP22.17■■□□□ 1.14
CLIP3-206ENST00000593074 PSME4Q14997 1843 aa22.17■■□□□ 1.14
CLIP3-206ENST00000593074 KMT5BQ4FZB7 885 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 TMEM179Q6ZVK1 233 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 KCTD1Q719H9 257 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 MMTAG2Q9BU76 263 aaKnown RBP22.16■■□□□ 1.14
CLIP3-206ENST00000593074 LRRC10BA6NIK2 292 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 USP17L10C9JJH3 530 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 TEX33O43247 280 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 STX10O60499 249 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 SLC16A2P36021 539 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 TECP42680 631 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 FXR2P51116 673 aaKnown RBP eCLIP22.16■■□□□ 1.14
CLIP3-206ENST00000593074 OGFOD1Q8N543 542 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 DCAF4Q8WV16 495 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 TSC1Q92574 1164 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 ZNF592Q92610 1267 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 GMLQ99445 158 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 PLIN2Q99541 437 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 ARFGEF1Q9Y6D6 1849 aa22.16■■□□□ 1.14
CLIP3-206ENST00000593074 SPDYE2BA6NHP3 402 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 SLC37A4O43826 429 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 TUBB4AP04350 444 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 SPDYE6P0CI01 402 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 SPAG1Q07617 926 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 SEPT2Q15019 361 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 DLGAP5Q15398 846 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 CALCRLQ16602 461 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 ABCB5Q2M3G0 1257 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 FILIP1LQ4L180 1135 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 CUL5Q93034 780 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 BAG1Q99933 345 aaPredicted RBP22.15■■□□□ 1.14
CLIP3-206ENST00000593074 PIM2Q9P1W9 311 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 KIF18AQ8NI77 898 aa22.15■■□□□ 1.14
CLIP3-206ENST00000593074 RAD21O60216 631 aa22.14■■□□□ 1.13
CLIP3-206ENST00000593074 TDP2O95551 362 aa22.14■■□□□ 1.13
CLIP3-206ENST00000593074 TGFB2P61812 414 aa22.14■■□□□ 1.13
CLIP3-206ENST00000593074 KRT31Q15323 416 aa22.14■■□□□ 1.13
CLIP3-206ENST00000593074 SHROOM1Q2M3G4 852 aaPredicted RBP22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms