RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	SH3BGR	P55822	239 aa	Predicted RBP	3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	FOXO4	P98177	505 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	CTDSPL2	Q05D32	466 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	TNIP1	Q15025	636 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	PLCB4	Q15147	1175 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	ENOX2	Q16206	610 aa	Known RBP	3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	CCDC38	Q502W7	563 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	EPHA10	Q5JZY3	1008 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	BEND6	Q5SZJ8	279 aa	Predicted RBP	3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	CEP85L	Q5SZL2	805 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	HAUS3	Q68CZ6	603 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	MAIP1	Q8WWC4	291 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	FAM89A	Q96GI7	184 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	BRIP1	Q9BX63	1249 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	PUS7L	Q9H0K6	701 aa	Known RBP	3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	VPS54	Q9P1Q0	977 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	DAAM1	Q9Y4D1	1078 aa		3.91	□□□□□ -1.78
VMP1-216	ENST00000592790	ABCB11	O95342	1321 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	TCHH	Q07283	1943 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	TTC36	A6NLP5	189 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	EXOC5	O00471	708 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	OR52Z1	P0C646	297 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	ARID4A	P29374	1257 aa	Predicted RBP	3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	PDE6B	P35913	854 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	MRPL12	P52815	198 aa	Known RBP	3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	CDK17	Q00537	523 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	PTPA	Q15257	358 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	SNCB	Q16143	134 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	ZNF827	Q17R98	1081 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	TRIM65	Q6PJ69	517 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	ATG9A	Q7Z3C6	839 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	C2CD5	Q86YS7	1000 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	GPIHBP1	Q8IV16	184 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	CUL5	Q93034	780 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	CNOT6L	Q96LI5	555 aa	Known RBP	3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	PSMD1	Q99460	953 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	METTL14	Q9HCE5	456 aa	Known RBP	3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	ZSWIM5	Q9P217	1185 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	PCDHA4	Q9UN74	947 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	L1RE1	Q9UN81	338 aa		3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	N4BP2	Q86UW6	1770 aa	Predicted RBP	3.9	□□□□□ -1.78
VMP1-216	ENST00000592790	SRRM3	A6NNA2	597 aa	Predicted RBP	3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	CCDC169	A6NNP5	214 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	KIF28P	B7ZC32	967 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	MAP2K7	O14733	419 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	SART1	O43290	800 aa	Known RBP	3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	LUC7L3	O95232	432 aa	Known RBP	3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	EPB41	P11171	864 aa	Known RBP	3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	ZNF18	P17022	549 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	AARS	P49588	968 aa	Known RBP eCLIP	3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	ATP2C1	P98194	919 aa	Predicted RBP	3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	ZNF662	Q6ZS27	426 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	TTLL7	Q6ZT98	887 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	MMGT1	Q8N4V1	131 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	UBL4B	Q8N7F7	174 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	ACRBP	Q8NEB7	543 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	MYL10	Q9BUA6	226 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	ISCA1	Q9BUE6	129 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	DISC1	Q9NRI5	854 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	LRWD1	Q9UFC0	647 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	PCDHB6	Q9Y5E3	794 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	LMTK3	Q96Q04	1460 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	PVALEF	A0A1B0GWK0	134 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790		E7EVH7	732 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	TRAF5	O00463	557 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	ERCC3	P19447	782 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	ALDH3A1	P30838	453 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	ATP11A	P98196	1134 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	KLHL30	Q0D2K2	578 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	CALCOCO2	Q13137	446 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	UBE4A	Q14139	1066 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	SETDB1	Q15047	1291 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	FIGN	Q5HY92	759 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	LRIG3	Q6UXM1	1119 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	EGFL6	Q8IUX8	553 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	MYOCD	Q8IZQ8	938 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	GBP7	Q8N8V2	638 aa	Predicted RBP	3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	UBLCP1	Q8WVY7	318 aa	Predicted RBP	3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	NLRP7	Q8WX94	980 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	DPF2	Q92785	391 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	CCDC97	Q96F63	343 aa	Predicted RBP	3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	NCAPG	Q9BPX3	1015 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	ZKSCAN3	Q9BRR0	538 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	TSPYL2	Q9H2G4	693 aa	Predicted RBP	3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	HOMER3	Q9NSC5	361 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM169A	Q9Y6X4	670 aa		3.9	□□□□□ -1.79
VMP1-216	ENST00000592790	MROH7-TTC4	A0A0A0MT08	1334 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	TULP2	O00295	520 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	A1BG	P04217	495 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	SERPING1	P05155	500 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	NR1D1	P20393	614 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	CTNNA1	P35221	906 aa	Known RBP	3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	ZNF76	P36508	570 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	LIG3	P49916	1009 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	VSNL1	P62760	191 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	DPYD	Q12882	1025 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	RAPGEF1	Q13905	1077 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	SEL1L2	Q5TEA6	688 aa		3.89	□□□□□ -1.79

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