RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 CYTH3O43739 400 aa23.35■■□□□ 1.33
ATG4D-208ENST00000588667 TOB2Q14106 344 aaPredicted RBP23.35■■□□□ 1.33
ATG4D-208ENST00000588667 ARMC5Q96C12 935 aa23.35■■□□□ 1.33
ATG4D-208ENST00000588667 RBM28Q9NW13 759 aaKnown RBP23.35■■□□□ 1.33
ATG4D-208ENST00000588667 GOLGA8BA8MQT2 603 aa23.34■■□□□ 1.33
ATG4D-208ENST00000588667 EVCP57679 992 aa23.34■■□□□ 1.33
ATG4D-208ENST00000588667 RTN1Q16799 776 aa23.34■■□□□ 1.33
ATG4D-208ENST00000588667 DPP9Q86TI2 863 aa23.34■■□□□ 1.33
ATG4D-208ENST00000588667 SLC5A4Q9NY91 659 aa23.34■■□□□ 1.33
ATG4D-208ENST00000588667 NAP1L2Q9ULW6 460 aaPredicted RBP23.34■■□□□ 1.33
ATG4D-208ENST00000588667 NID2Q14112 1375 aa23.34■■□□□ 1.33
ATG4D-208ENST00000588667 RBBP6Q7Z6E9 1792 aaKnown RBP23.34■■□□□ 1.33
ATG4D-208ENST00000588667 GOLGA8AA7E2F4 631 aa23.33■■□□□ 1.33
ATG4D-208ENST00000588667 ZBTB5O15062 677 aa23.33■■□□□ 1.33
ATG4D-208ENST00000588667 PLEKHA8P1O95397 391 aa23.33■■□□□ 1.33
ATG4D-208ENST00000588667 ELNP15502 786 aa23.33■■□□□ 1.33
ATG4D-208ENST00000588667 TAL1P17542 331 aaPredicted RBP23.33■■□□□ 1.33
ATG4D-208ENST00000588667 AK2P54819 239 aa23.33■■□□□ 1.33
ATG4D-208ENST00000588667 ANKRD1Q15327 319 aa23.33■■□□□ 1.33
ATG4D-208ENST00000588667 TMTC3Q6ZXV5 915 aa23.33■■□□□ 1.33
ATG4D-208ENST00000588667 TRMT44Q8IYL2 757 aaKnown RBP23.33■■□□□ 1.33
ATG4D-208ENST00000588667 SH3TC2Q8TF17 1288 aa23.33■■□□□ 1.33
ATG4D-208ENST00000588667 ALDH8A1Q9H2A2 487 aaPredicted RBP23.33■■□□□ 1.33
ATG4D-208ENST00000588667 PPP2R5BQ15173 497 aa23.33■■□□□ 1.32
ATG4D-208ENST00000588667 MUM1L1Q5H9M0 696 aa23.33■■□□□ 1.32
ATG4D-208ENST00000588667 FBXO11Q86XK2 927 aa23.33■■□□□ 1.32
ATG4D-208ENST00000588667 ANKRD35Q8N283 1001 aa23.33■■□□□ 1.32
ATG4D-208ENST00000588667 SPRYD3Q8NCJ5 442 aa23.33■■□□□ 1.32
ATG4D-208ENST00000588667 KIAA0100Q14667 2235 aaKnown RBP23.32■■□□□ 1.32
ATG4D-208ENST00000588667 COBLO75128 1261 aa23.32■■□□□ 1.32
ATG4D-208ENST00000588667 HMGCRP04035 888 aa23.32■■□□□ 1.32
ATG4D-208ENST00000588667 METAP2P50579 478 aaKnown RBP eCLIP23.32■■□□□ 1.32
ATG4D-208ENST00000588667 USH1GQ495M9 461 aa23.32■■□□□ 1.32
ATG4D-208ENST00000588667 HOMER1Q86YM7 354 aa23.32■■□□□ 1.32
ATG4D-208ENST00000588667 SRBD1Q8N5C6 995 aaKnown RBP23.32■■□□□ 1.32
ATG4D-208ENST00000588667 TRIB2Q92519 343 aa23.32■■□□□ 1.32
ATG4D-208ENST00000588667 DDX11Q96FC9 970 aa23.32■■□□□ 1.32
ATG4D-208ENST00000588667 TMX3Q96JJ7 454 aa23.32■■□□□ 1.32
ATG4D-208ENST00000588667 PIGSQ96S52 555 aa23.32■■□□□ 1.32
ATG4D-208ENST00000588667 AMNQ9BXJ7 453 aa23.32■■□□□ 1.32
ATG4D-208ENST00000588667 LIMCH1Q9UPQ0 1083 aa23.32■■□□□ 1.32
ATG4D-208ENST00000588667 PFASO15067 1338 aa23.31■■□□□ 1.32
ATG4D-208ENST00000588667 ABCB11O95342 1321 aa23.31■■□□□ 1.32
ATG4D-208ENST00000588667 PGK2P07205 417 aa23.31■■□□□ 1.32
ATG4D-208ENST00000588667 NPLOC4Q8TAT6 608 aa23.31■■□□□ 1.32
ATG4D-208ENST00000588667 ZNF333Q96JL9 665 aa23.31■■□□□ 1.32
ATG4D-208ENST00000588667 SLKQ9H2G2 1235 aaPredicted RBP23.31■■□□□ 1.32
ATG4D-208ENST00000588667 A1CFQ9NQ94 594 aaKnown RBP23.31■■□□□ 1.32
ATG4D-208ENST00000588667 DNAJC25-GNG10A0A024R161 153 aa23.3■■□□□ 1.32
ATG4D-208ENST00000588667 PNMA6FA0A0J9YX94 578 aa23.3■■□□□ 1.32
ATG4D-208ENST00000588667 CCDC196A0A1B0GTZ2 297 aa23.3■■□□□ 1.32
ATG4D-208ENST00000588667 TRAF1Q13077 416 aa23.3■■□□□ 1.32
ATG4D-208ENST00000588667 CCL14Q16627 93 aa23.3■■□□□ 1.32
ATG4D-208ENST00000588667 NOL8Q76FK4 1167 aaKnown RBP23.3■■□□□ 1.32
ATG4D-208ENST00000588667 RRP36Q96EU6 259 aaKnown RBP23.3■■□□□ 1.32
ATG4D-208ENST00000588667 BIN2Q9UBW5 565 aaPredicted RBP23.3■■□□□ 1.32
ATG4D-208ENST00000588667 DIS3Q9Y2L1 958 aaKnown RBP23.3■■□□□ 1.32
ATG4D-208ENST00000588667 LCTP09848 1927 aa23.3■■□□□ 1.32
ATG4D-208ENST00000588667 NFIBO00712 420 aa23.3■■□□□ 1.32
ATG4D-208ENST00000588667 ZNF792Q3KQV3 632 aa23.3■■□□□ 1.32
ATG4D-208ENST00000588667 CMTR1Q8N1G2 835 aaKnown RBP23.3■■□□□ 1.32
ATG4D-208ENST00000588667 CLEC4DQ8WXI8 215 aa23.3■■□□□ 1.32
ATG4D-208ENST00000588667 FAM217BQ9NTX9 383 aaPredicted RBP23.3■■□□□ 1.32
ATG4D-208ENST00000588667 PPP1R11O60927 126 aaPredicted RBP23.29■■□□□ 1.32
ATG4D-208ENST00000588667 INHAP05111 366 aa23.29■■□□□ 1.32
ATG4D-208ENST00000588667 PDIA3P30101 505 aaKnown RBP23.29■■□□□ 1.32
ATG4D-208ENST00000588667 CDC27P30260 824 aa23.29■■□□□ 1.32
ATG4D-208ENST00000588667 UBXN2AP68543 259 aa23.29■■□□□ 1.32
ATG4D-208ENST00000588667 OLFML2BQ68BL8 750 aa23.29■■□□□ 1.32
ATG4D-208ENST00000588667 MAML3Q96JK9 1138 aa23.29■■□□□ 1.32
ATG4D-208ENST00000588667 ZSCAN31Q96LW9 406 aaPredicted RBP23.29■■□□□ 1.32
ATG4D-208ENST00000588667 SEC63Q9UGP8 760 aaKnown RBP23.29■■□□□ 1.32
ATG4D-208ENST00000588667 BRCA2P51587 3418 aa23.28■■□□□ 1.32
ATG4D-208ENST00000588667 CNTNAP5Q8WYK1 1306 aa23.28■■□□□ 1.32
ATG4D-208ENST00000588667 NSMFQ6X4W1 530 aa23.28■■□□□ 1.32
ATG4D-208ENST00000588667 ZNF274Q96GC6 653 aaPredicted RBP23.28■■□□□ 1.32
ATG4D-208ENST00000588667 MAF1Q9H063 256 aa23.28■■□□□ 1.32
ATG4D-208ENST00000588667 CYP39A1Q9NYL5 469 aa23.28■■□□□ 1.32
ATG4D-208ENST00000588667 FLRT1Q9NZU1 646 aa23.28■■□□□ 1.32
ATG4D-208ENST00000588667 MRPL11Q9Y3B7 192 aaKnown RBP23.28■■□□□ 1.32
ATG4D-208ENST00000588667 MCM3APO60318 1980 aa23.27■■□□□ 1.32
ATG4D-208ENST00000588667 CUL4AQ13619 759 aa23.27■■□□□ 1.32
ATG4D-208ENST00000588667 CCDC82Q8N4S0 544 aa23.27■■□□□ 1.32
ATG4D-208ENST00000588667 PIBF1Q8WXW3 757 aa23.27■■□□□ 1.32
ATG4D-208ENST00000588667 SH2B1Q9NRF2 756 aaPredicted RBP23.27■■□□□ 1.32
ATG4D-208ENST00000588667 PCDHA1Q9Y5I3 950 aa23.27■■□□□ 1.32
ATG4D-208ENST00000588667 POTEB2H3BUK9 544 aa23.26■■□□□ 1.31
ATG4D-208ENST00000588667 IGHA2P01877 340 aa23.26■■□□□ 1.31
ATG4D-208ENST00000588667 FUT2Q10981 343 aa23.26■■□□□ 1.31
ATG4D-208ENST00000588667 FAM133AQ8N9E0 248 aa23.26■■□□□ 1.31
ATG4D-208ENST00000588667 ADD1P35611 737 aaKnown RBP23.26■■□□□ 1.31
ATG4D-208ENST00000588667 MFSD14CQ5VZR4 134 aa23.26■■□□□ 1.31
ATG4D-208ENST00000588667 ZNF467Q7Z7K2 595 aaPredicted RBP23.26■■□□□ 1.31
ATG4D-208ENST00000588667 RGS22Q8NE09 1264 aa23.26■■□□□ 1.31
ATG4D-208ENST00000588667 INTS4Q96HW7 963 aaKnown RBP23.26■■□□□ 1.31
ATG4D-208ENST00000588667 PTPDC1A2A3K4 754 aa23.25■■□□□ 1.31
ATG4D-208ENST00000588667 BAATQ14032 418 aaPredicted RBP23.25■■□□□ 1.31
ATG4D-208ENST00000588667 MAP3K21Q5TCX8 1036 aa23.25■■□□□ 1.31
ATG4D-208ENST00000588667 RNF207Q6ZRF8 634 aa23.25■■□□□ 1.31
ATG4D-208ENST00000588667 MCF2L2Q86YR7 1114 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms