RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 REV3LO60673 3130 aa25.97■■□□□ 1.75
SHMT1-210ENST00000583780 CABYRO75952 493 aa25.96■■□□□ 1.75
SHMT1-210ENST00000583780 TAPT1Q6NXT6 567 aa25.96■■□□□ 1.75
SHMT1-210ENST00000583780 OTOP2Q7RTS6 562 aa25.96■■□□□ 1.75
SHMT1-210ENST00000583780 DYNC1LI2O43237 492 aaPredicted RBP25.95■■□□□ 1.74
SHMT1-210ENST00000583780 IGFBP4P22692 258 aa25.95■■□□□ 1.74
SHMT1-210ENST00000583780 TDO2P48775 406 aa25.95■■□□□ 1.74
SHMT1-210ENST00000583780 CCL23P55773 120 aa25.95■■□□□ 1.74
SHMT1-210ENST00000583780 MRPS5P82675 430 aaKnown RBP25.95■■□□□ 1.74
SHMT1-210ENST00000583780 FSCN1Q16658 493 aaKnown RBP25.95■■□□□ 1.74
SHMT1-210ENST00000583780 NOL8Q76FK4 1167 aaKnown RBP25.95■■□□□ 1.74
SHMT1-210ENST00000583780 STAG1Q8WVM7 1258 aa25.95■■□□□ 1.74
SHMT1-210ENST00000583780 NOC4LQ9BVI4 516 aaKnown RBP25.95■■□□□ 1.74
SHMT1-210ENST00000583780 TRPV6Q9H1D0 765 aa25.95■■□□□ 1.74
SHMT1-210ENST00000583780 WNT8AQ9H1J5 351 aa25.95■■□□□ 1.74
SHMT1-210ENST00000583780 SLC28A3Q9HAS3 691 aa25.95■■□□□ 1.74
SHMT1-210ENST00000583780 ZNF287Q9HBT7 754 aa25.95■■□□□ 1.74
SHMT1-210ENST00000583780 RNF146Q9NTX7 359 aa25.95■■□□□ 1.74
SHMT1-210ENST00000583780 RAPGEFL1Q9UHV5 662 aa25.95■■□□□ 1.74
SHMT1-210ENST00000583780 LCTP09848 1927 aa25.94■■□□□ 1.74
SHMT1-210ENST00000583780 BDP1A6H8Y1 2624 aa25.94■■□□□ 1.74
SHMT1-210ENST00000583780 ASB14A6NK59 587 aa25.94■■□□□ 1.74
SHMT1-210ENST00000583780 B4GALT4O60513 344 aa25.94■■□□□ 1.74
SHMT1-210ENST00000583780 GNAT2P19087 354 aa25.94■■□□□ 1.74
SHMT1-210ENST00000583780 TLK2Q86UE8 772 aa25.94■■□□□ 1.74
SHMT1-210ENST00000583780 ADAMTS19Q8TE59 1207 aa25.94■■□□□ 1.74
SHMT1-210ENST00000583780 CHURC1Q8WUH1 139 aa25.94■■□□□ 1.74
SHMT1-210ENST00000583780 TRERF1Q96PN7 1200 aa25.94■■□□□ 1.74
SHMT1-210ENST00000583780 CHMP4BQ9H444 224 aaKnown RBP25.94■■□□□ 1.74
SHMT1-210ENST00000583780 PLIN4Q96Q06 1357 aa25.94■■□□□ 1.74
SHMT1-210ENST00000583780 APPP05067 770 aa25.93■■□□□ 1.74
SHMT1-210ENST00000583780 STAT2P52630 851 aa25.93■■□□□ 1.74
SHMT1-210ENST00000583780 RABGGTBP53611 331 aa25.93■■□□□ 1.74
SHMT1-210ENST00000583780 TFAP4Q01664 338 aa25.93■■□□□ 1.74
SHMT1-210ENST00000583780 TSHZ3Q63HK5 1081 aa25.93■■□□□ 1.74
SHMT1-210ENST00000583780 IQSEC1Q6DN90 963 aa25.93■■□□□ 1.74
SHMT1-210ENST00000583780 GMCL1Q96IK5 515 aa25.93■■□□□ 1.74
SHMT1-210ENST00000583780 SEC62Q99442 399 aaKnown RBP25.93■■□□□ 1.74
SHMT1-210ENST00000583780 Q9Y3F1 56 aa25.93■■□□□ 1.74
SHMT1-210ENST00000583780 LRRC37A2A6NM11 1700 aa25.93■■□□□ 1.74
SHMT1-210ENST00000583780 PLA2G6O60733 806 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 ZFYP08048 801 aaPredicted RBP25.92■■□□□ 1.74
SHMT1-210ENST00000583780 TSPY3P0CV98 308 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 TSPY8P0CW00 308 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 MYOGP15173 224 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 MCCP23508 829 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 PSMC6P62333 389 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 TKFCQ3LXA3 575 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 MUM1L1Q5H9M0 696 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 FAM160B2Q86V87 743 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 CHMP4CQ96CF2 233 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 PURBQ96QR8 312 aaKnown RBP25.92■■□□□ 1.74
SHMT1-210ENST00000583780 SEZ6LQ9BYH1 1024 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 AP5M1Q9H0R1 490 aa25.92■■□□□ 1.74
SHMT1-210ENST00000583780 ALAS1P13196 640 aa25.91■■□□□ 1.74
SHMT1-210ENST00000583780 SNAP25P60880 206 aa25.91■■□□□ 1.74
SHMT1-210ENST00000583780 EEPD1Q7L9B9 569 aa25.91■■□□□ 1.74
SHMT1-210ENST00000583780 YTHDC1Q96MU7 727 aaKnown RBP25.91■■□□□ 1.74
SHMT1-210ENST00000583780 MTIF3Q9H2K0 278 aaKnown RBP25.91■■□□□ 1.74
SHMT1-210ENST00000583780 C20orf194Q5TEA3 1177 aa25.9■■□□□ 1.74
SHMT1-210ENST00000583780 MORC4Q8TE76 937 aa25.9■■□□□ 1.74
SHMT1-210ENST00000583780 SCLYQ96I15 445 aa25.9■■□□□ 1.74
SHMT1-210ENST00000583780 DCTPP1Q9H773 170 aa25.9■■□□□ 1.74
SHMT1-210ENST00000583780 IL17RBQ9NRM6 502 aa25.9■■□□□ 1.74
SHMT1-210ENST00000583780 CYP39A1Q9NYL5 469 aa25.9■■□□□ 1.74
SHMT1-210ENST00000583780 SCN5AQ14524 2016 aa25.9■■□□□ 1.74
SHMT1-210ENST00000583780 PRRC2BQ5JSZ5 2229 aaKnown RBP25.9■■□□□ 1.74
SHMT1-210ENST00000583780 SLC1A4P43007 532 aa25.89■■□□□ 1.74
SHMT1-210ENST00000583780 PDE4BQ07343 736 aa25.89■■□□□ 1.74
SHMT1-210ENST00000583780 RCSD1Q6JBY9 416 aa25.89■■□□□ 1.74
SHMT1-210ENST00000583780 KCTD1Q719H9 257 aa25.89■■□□□ 1.74
SHMT1-210ENST00000583780 RPUSD2Q8IZ73 545 aaKnown RBP25.89■■□□□ 1.74
SHMT1-210ENST00000583780 UHRF1Q96T88 793 aaPredicted RBP25.89■■□□□ 1.74
SHMT1-210ENST00000583780 INCENPQ9NQS7 918 aa25.89■■□□□ 1.74
SHMT1-210ENST00000583780 PRR12Q9ULL5 1215 aa25.89■■□□□ 1.74
SHMT1-210ENST00000583780 ZEB2O60315 1214 aa25.88■■□□□ 1.73
SHMT1-210ENST00000583780 BMP1P13497 986 aa25.88■■□□□ 1.73
SHMT1-210ENST00000583780 PPARAQ07869 468 aa25.88■■□□□ 1.73
SHMT1-210ENST00000583780 FBXO16Q8IX29 292 aaPredicted RBP25.88■■□□□ 1.73
SHMT1-210ENST00000583780 PCDHA11Q9Y5I1 949 aa25.88■■□□□ 1.73
SHMT1-210ENST00000583780 SLC4A7Q9Y6M7 1214 aa25.88■■□□□ 1.73
SHMT1-210ENST00000583780 RASGRP2Q7LDG7 609 aa25.87■■□□□ 1.73
SHMT1-210ENST00000583780 ALDH8A1Q9H2A2 487 aaPredicted RBP25.87■■□□□ 1.73
SHMT1-210ENST00000583780 TRANK1O15050 2925 aa25.87■■□□□ 1.73
SHMT1-210ENST00000583780 TTLL4Q14679 1199 aa25.86■■□□□ 1.73
SHMT1-210ENST00000583780 KIAA1211Q6ZU35 1233 aa25.86■■□□□ 1.73
SHMT1-210ENST00000583780 ISY1Q9ULR0 285 aaKnown RBP25.86■■□□□ 1.73
SHMT1-210ENST00000583780 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.86■■□□□ 1.73
SHMT1-210ENST00000583780 XIRP2A4UGR9 3374 aa25.86■■□□□ 1.73
SHMT1-210ENST00000583780 FOXP2O15409 715 aa25.85■■□□□ 1.73
SHMT1-210ENST00000583780 NMT2O60551 498 aa25.85■■□□□ 1.73
SHMT1-210ENST00000583780 IKQ13123 557 aaPredicted RBP25.85■■□□□ 1.73
SHMT1-210ENST00000583780 DUSP28Q4G0W2 176 aa25.85■■□□□ 1.73
SHMT1-210ENST00000583780 PPP2R2DQ66LE6 453 aa25.85■■□□□ 1.73
SHMT1-210ENST00000583780 NECAB3Q96P71 396 aaPredicted RBP25.85■■□□□ 1.73
SHMT1-210ENST00000583780 NACAP1Q9BZK3 213 aa25.85■■□□□ 1.73
SHMT1-210ENST00000583780 VTA1Q9NP79 307 aa25.85■■□□□ 1.73
SHMT1-210ENST00000583780 TRMT13Q9NUP7 481 aaKnown RBP25.85■■□□□ 1.73
SHMT1-210ENST00000583780 TET1Q8NFU7 2136 aa25.84■■□□□ 1.73
SHMT1-210ENST00000583780 RFXAPO00287 272 aa25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms