RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 AK5Q9Y6K8 562 aa6.05□□□□□ -1.44
SMCHD1-209ENST00000583441 A0A1W2PQJ5 194 aa6.04□□□□□ -1.44
SMCHD1-209ENST00000583441 NANOS3P60323 173 aaKnown RBP6.04□□□□□ -1.44
SMCHD1-209ENST00000583441 RGL3Q3MIN7 710 aa6.04□□□□□ -1.44
SMCHD1-209ENST00000583441 B3GNT8Q7Z7M8 397 aa6.04□□□□□ -1.44
SMCHD1-209ENST00000583441 C12orf49Q9H741 205 aa6.04□□□□□ -1.44
SMCHD1-209ENST00000583441 METTL5Q9NRN9 209 aaKnown RBP6.04□□□□□ -1.44
SMCHD1-209ENST00000583441 SPATA6Q9NWH7 488 aaPredicted RBP6.04□□□□□ -1.44
SMCHD1-209ENST00000583441 CORINQ9Y5Q5 1042 aa6.04□□□□□ -1.44
SMCHD1-209ENST00000583441 PPFIA2O75334 1257 aa6.03□□□□□ -1.44
SMCHD1-209ENST00000583441 DBHP09172 617 aa6.03□□□□□ -1.44
SMCHD1-209ENST00000583441 ZNF585AQ6P3V2 769 aa6.03□□□□□ -1.44
SMCHD1-209ENST00000583441 CEP89Q96ST8 783 aa6.03□□□□□ -1.44
SMCHD1-209ENST00000583441 CDADC1Q9BWV3 514 aa6.03□□□□□ -1.44
SMCHD1-209ENST00000583441 BACH2Q9BYV9 841 aa6.03□□□□□ -1.44
SMCHD1-209ENST00000583441 MIR1-1HGQ9H1L0 117 aa6.03□□□□□ -1.44
SMCHD1-209ENST00000583441 ERVK13-1Q9NX77 482 aa6.03□□□□□ -1.44
SMCHD1-209ENST00000583441 FAM8A1Q9UBU6 413 aa6.03□□□□□ -1.44
SMCHD1-209ENST00000583441 DBR1Q9UK59 544 aaKnown RBP6.03□□□□□ -1.44
SMCHD1-209ENST00000583441 TTF2Q9UNY4 1162 aaKnown RBP6.03□□□□□ -1.44
SMCHD1-209ENST00000583441 ASGR2P07307 311 aa6.02□□□□□ -1.45
SMCHD1-209ENST00000583441 PRR5P85299 388 aa6.02□□□□□ -1.45
SMCHD1-209ENST00000583441 RPL6Q02878 288 aaKnown RBP6.02□□□□□ -1.45
SMCHD1-209ENST00000583441 TMC3Q7Z5M5 1100 aa6.02□□□□□ -1.45
SMCHD1-209ENST00000583441 FAM161BQ96MY7 647 aa6.02□□□□□ -1.45
SMCHD1-209ENST00000583441 JMJD8Q96S16 334 aa6.02□□□□□ -1.45
SMCHD1-209ENST00000583441 RNF19AQ9NV58 838 aa6.02□□□□□ -1.45
SMCHD1-209ENST00000583441 F8W031 263 aaPredicted RBP6.01□□□□□ -1.45
SMCHD1-209ENST00000583441 SRGAP3O43295 1099 aa6.01□□□□□ -1.45
SMCHD1-209ENST00000583441 SMARCA5O60264 1052 aaPredicted RBP6.01□□□□□ -1.45
SMCHD1-209ENST00000583441 TMEM201Q5SNT2 666 aa6.01□□□□□ -1.45
SMCHD1-209ENST00000583441 CDCP2Q5VXM1 449 aa6.01□□□□□ -1.45
SMCHD1-209ENST00000583441 BICRALQ6AI39 1079 aa6.01□□□□□ -1.45
SMCHD1-209ENST00000583441 DNAJC10Q8IXB1 793 aa6.01□□□□□ -1.45
SMCHD1-209ENST00000583441 PHACTR4Q8IZ21 702 aa6.01□□□□□ -1.45
SMCHD1-209ENST00000583441 TMEM87AQ8NBN3 555 aa6.01□□□□□ -1.45
SMCHD1-209ENST00000583441 ALG3Q92685 438 aa6.01□□□□□ -1.45
SMCHD1-209ENST00000583441 CD248Q9HCU0 757 aa6.01□□□□□ -1.45
SMCHD1-209ENST00000583441 MROH6A6NGR9 719 aa6□□□□□ -1.45
SMCHD1-209ENST00000583441 NPIPB8E9PQR5 432 aa6□□□□□ -1.45
SMCHD1-209ENST00000583441 GBP1P32455 592 aa6□□□□□ -1.45
SMCHD1-209ENST00000583441 RNF4P78317 190 aa6□□□□□ -1.45
SMCHD1-209ENST00000583441 SURF1Q15526 300 aa6□□□□□ -1.45
SMCHD1-209ENST00000583441 DIEXFQ68CQ4 756 aaKnown RBP6□□□□□ -1.45
SMCHD1-209ENST00000583441 ZBTB8AQ96BR9 441 aa6□□□□□ -1.45
SMCHD1-209ENST00000583441 NOX5Q96PH1 765 aa6□□□□□ -1.45
SMCHD1-209ENST00000583441 TCAF1Q9Y4C2 921 aa6□□□□□ -1.45
SMCHD1-209ENST00000583441 USP17L7P0C7H9 530 aa5.99□□□□□ -1.45
SMCHD1-209ENST00000583441 ST13P50502 369 aaKnown RBP5.99□□□□□ -1.45
SMCHD1-209ENST00000583441 SPDYAQ5MJ70 313 aa5.99□□□□□ -1.45
SMCHD1-209ENST00000583441 ANTXR1Q9H6X2 564 aa5.99□□□□□ -1.45
SMCHD1-209ENST00000583441 NPEPPSL1A6NEC2 478 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 CHURC1-FNTBB4DL54 471 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 MUSKO15146 869 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 LAMTOR5O43504 91 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 PRAMEF1O95521 474 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 ZNF76P36508 570 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 SMARCC2Q8TAQ2 1214 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 JARID2Q92833 1246 aaPredicted RBP5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 RNF34Q969K3 372 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 KIF2CQ99661 725 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 PPP4R1LQ9P1A2 415 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 KLHL3Q9UH77 587 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 PCSK5Q92824 1860 aa5.98□□□□□ -1.45
SMCHD1-209ENST00000583441 FANCCQ00597 558 aa5.97□□□□□ -1.45
SMCHD1-209ENST00000583441 ABHD18Q0P651 414 aa5.97□□□□□ -1.45
SMCHD1-209ENST00000583441 CSRP2Q16527 193 aa5.97□□□□□ -1.45
SMCHD1-209ENST00000583441 AGMOQ6ZNB7 445 aa5.97□□□□□ -1.45
SMCHD1-209ENST00000583441 C8orf37Q96NL8 207 aa5.97□□□□□ -1.45
SMCHD1-209ENST00000583441 IKZF4Q9H2S9 585 aa5.97□□□□□ -1.45
SMCHD1-209ENST00000583441 SEMA4AQ9H3S1 761 aa5.97□□□□□ -1.45
SMCHD1-209ENST00000583441 USP31Q70CQ4 1352 aa5.96□□□□□ -1.45
SMCHD1-209ENST00000583441 CTSHP09668 335 aa5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 ERCC5P28715 1186 aaPredicted RBP5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 CEBPAP49715 358 aaPredicted RBP5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 SELENOPP49908 381 aa5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 ZC3H6P61129 1189 aaKnown RBP5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 HDLBPQ00341 1268 aaKnown RBP5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 SMAD4Q13485 552 aaKnown RBP5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 TAF1CQ15572 869 aaPredicted RBP5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 CCDC85BQ15834 202 aaPredicted RBP5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 NBPF9Q3BBW0 867 aa5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 FAM26FQ5R3K3 315 aa5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 LDLRAD1Q5T700 205 aa5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 CIR1Q86X95 450 aaPredicted RBP5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 JAMLQ86YT9 394 aa5.96□□□□□ -1.46
SMCHD1-209ENST00000583441 SIGLEC6O43699 453 aa5.95□□□□□ -1.46
SMCHD1-209ENST00000583441 PMLP29590 882 aa5.95□□□□□ -1.46
SMCHD1-209ENST00000583441 DPTQ07507 201 aa5.95□□□□□ -1.46
SMCHD1-209ENST00000583441 SNW1Q13573 536 aaKnown RBP5.95□□□□□ -1.46
SMCHD1-209ENST00000583441 HS2ST1Q7LGA3 356 aa5.95□□□□□ -1.46
SMCHD1-209ENST00000583441 TMEM52Q8NDY8 209 aa5.95□□□□□ -1.46
SMCHD1-209ENST00000583441 CRAMP1Q96RY5 1269 aa5.95□□□□□ -1.46
SMCHD1-209ENST00000583441 DLL4Q9NR61 685 aa5.95□□□□□ -1.46
SMCHD1-209ENST00000583441 AP5S1Q9NUS5 200 aa5.95□□□□□ -1.46
SMCHD1-209ENST00000583441 TESMINQ9Y4I5 508 aa5.95□□□□□ -1.46
SMCHD1-209ENST00000583441 MAP3K11Q16584 847 aa5.94□□□□□ -1.46
SMCHD1-209ENST00000583441 HLA-DQA1Q5Y7H0 255 aa5.94□□□□□ -1.46
SMCHD1-209ENST00000583441 NT5DC4Q86YG4 428 aa5.94□□□□□ -1.46
SMCHD1-209ENST00000583441 DNERQ8NFT8 737 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms