RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 BLIDQ8IZY5 108 aa12.33□□□□□ -0.44
SS18-213ENST00000579640 CPXCR1Q8N123 301 aa12.33□□□□□ -0.44
SS18-213ENST00000579640 CUL5Q93034 780 aa12.33□□□□□ -0.44
SS18-213ENST00000579640 PARK7Q99497 189 aaKnown RBP12.33□□□□□ -0.44
SS18-213ENST00000579640 TEX13BQ9BXU2 312 aa12.33□□□□□ -0.44
SS18-213ENST00000579640 MAF1Q9H063 256 aa12.33□□□□□ -0.44
SS18-213ENST00000579640 RIC8AQ9NPQ8 531 aa12.33□□□□□ -0.44
SS18-213ENST00000579640 ZNF214Q9UL59 606 aaPredicted RBP12.33□□□□□ -0.44
SS18-213ENST00000579640 COL11A1P12107 1806 aaPredicted RBP12.32□□□□□ -0.44
SS18-213ENST00000579640 COPB2P35606 906 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 RESTQ13127 1097 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 NPY5RQ15761 445 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 MCTP2Q6DN12 878 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 PAXIP1Q6ZW49 1069 aaPredicted RBP12.32□□□□□ -0.44
SS18-213ENST00000579640 SAMD3Q8N6K7 520 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 AGBL1Q96MI9 1066 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 PSTPIP2Q9H939 334 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 RAVER2Q9HCJ3 691 aaKnown RBP12.32□□□□□ -0.44
SS18-213ENST00000579640 RABGAP1Q9Y3P9 1069 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 BTBD18B2RXH4 712 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 STAT3P40763 770 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 GCLCP48506 637 aaPredicted RBP12.32□□□□□ -0.44
SS18-213ENST00000579640 TMEM132BQ14DG7 1078 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 SNRNP48Q6IEG0 339 aaKnown RBP12.32□□□□□ -0.44
SS18-213ENST00000579640 CYP4F22Q6NT55 531 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 FERMT3Q86UX7 667 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 MCF2L2Q86YR7 1114 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 FAM43AQ8N2R8 423 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 SMCR8Q8TEV9 937 aaPredicted RBP12.32□□□□□ -0.44
SS18-213ENST00000579640 PTPN18Q99952 460 aa12.32□□□□□ -0.44
SS18-213ENST00000579640 PIK3CDO00329 1044 aa12.31□□□□□ -0.44
SS18-213ENST00000579640 TM4SF4P48230 202 aa12.31□□□□□ -0.44
SS18-213ENST00000579640 FOXD4L5Q5VV16 416 aaPredicted RBP12.31□□□□□ -0.44
SS18-213ENST00000579640 NOSTRINQ8IVI9 506 aa12.31□□□□□ -0.44
SS18-213ENST00000579640 REXO1Q8N1G1 1221 aaKnown RBP12.31□□□□□ -0.44
SS18-213ENST00000579640 FOXD4L4Q8WXT5 416 aaPredicted RBP12.31□□□□□ -0.44
SS18-213ENST00000579640 CAPNS2Q96L46 248 aa12.31□□□□□ -0.44
SS18-213ENST00000579640 MAP3K20Q9NYL2 800 aaKnown RBP12.31□□□□□ -0.44
SS18-213ENST00000579640 KIF28PB7ZC32 967 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 M0R2N6 131 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 SLC25A27O95847 323 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 ALAS1P13196 640 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 C1QTNF8P60827 252 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 GHRHRQ02643 423 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 KRT25Q7Z3Z0 450 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 IFNL1Q8IU54 200 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 RIOX2Q8IUF8 465 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 CHST13Q8NET6 341 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 OXER1Q8TDS5 423 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 TNPO1Q92973 898 aaKnown RBP12.3□□□□□ -0.44
SS18-213ENST00000579640 TNFRSF25Q93038 417 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 TRERF1Q96PN7 1200 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 SPATC1LQ9H0A9 340 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 BTBD7Q9P203 1132 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 FBXO40Q9UH90 709 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 PCDHA6Q9UN73 950 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 PCDHA8Q9Y5H6 950 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 CCDC194A0A1B0GVG4 234 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 GCOM1H8Y6P7 765 aaPredicted RBP12.3□□□□□ -0.44
SS18-213ENST00000579640 IGF2BP3O00425 579 aaKnown RBP eCLIP12.3□□□□□ -0.44
SS18-213ENST00000579640 CNMDO75829 334 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 ALDH1A1P00352 501 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 FOSP01100 380 aaPredicted RBP12.3□□□□□ -0.44
SS18-213ENST00000579640 POLR2MP0CAP2 368 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 CYP2C8P10632 490 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 CLK2P49760 499 aaKnown RBP12.3□□□□□ -0.44
SS18-213ENST00000579640 NR5A1Q13285 461 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 AP3B2Q13367 1082 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 PLS1Q14651 629 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 ATL3Q6DD88 541 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 PAGR1Q9BTK6 254 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 RNF146Q9NTX7 359 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 RBPJLQ9UBG7 517 aa12.3□□□□□ -0.44
SS18-213ENST00000579640 RBBP6Q7Z6E9 1792 aaKnown RBP12.29□□□□□ -0.44
SS18-213ENST00000579640 OPLAHO14841 1288 aa12.29□□□□□ -0.44
SS18-213ENST00000579640 CCNA1P78396 465 aa12.29□□□□□ -0.44
SS18-213ENST00000579640 RILPL1Q5EBL4 403 aa12.29□□□□□ -0.44
SS18-213ENST00000579640 MYSM1Q5VVJ2 828 aa12.29□□□□□ -0.44
SS18-213ENST00000579640 POTEEQ6S8J3 1075 aa12.29□□□□□ -0.44
SS18-213ENST00000579640 CLEC17AQ6ZS10 378 aa12.29□□□□□ -0.44
SS18-213ENST00000579640 SHCBP1Q8NEM2 672 aa12.29□□□□□ -0.44
SS18-213ENST00000579640 GPRC5AQ8NFJ5 357 aa12.29□□□□□ -0.44
SS18-213ENST00000579640 CLEC4DQ8WXI8 215 aa12.29□□□□□ -0.44
SS18-213ENST00000579640 ZNF396Q96N95 335 aaPredicted RBP12.29□□□□□ -0.44
SS18-213ENST00000579640 ACAD9Q9H845 621 aa12.29□□□□□ -0.44
SS18-213ENST00000579640 MORF4L1Q9UBU8 362 aa12.29□□□□□ -0.44
SS18-213ENST00000579640 NOL7Q9UMY1 257 aaKnown RBP12.29□□□□□ -0.44
SS18-213ENST00000579640 MEIS2O14770 477 aa12.28□□□□□ -0.44
SS18-213ENST00000579640 TRAPPC10P48553 1259 aa12.28□□□□□ -0.44
SS18-213ENST00000579640 ERVK-9P63128 1117 aa12.28□□□□□ -0.44
SS18-213ENST00000579640 ERVK-24P63145 666 aa12.28□□□□□ -0.44
SS18-213ENST00000579640 GRM1Q13255 1194 aa12.28□□□□□ -0.44
SS18-213ENST00000579640 TAF1CQ15572 869 aaPredicted RBP12.28□□□□□ -0.44
SS18-213ENST00000579640 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.28□□□□□ -0.44
SS18-213ENST00000579640 GBP4Q96PP9 640 aa12.28□□□□□ -0.44
SS18-213ENST00000579640 ZFYVE28Q9HCC9 887 aa12.28□□□□□ -0.44
SS18-213ENST00000579640 TXNRD2Q9NNW7 524 aa12.28□□□□□ -0.44
SS18-213ENST00000579640 BIN2Q9UBW5 565 aaPredicted RBP12.28□□□□□ -0.44
SS18-213ENST00000579640 RIPK3Q9Y572 518 aa12.28□□□□□ -0.44
SS18-213ENST00000579640 SMCHD1A6NHR9 2005 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms