RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, human

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCE1-215	ENST00000578995	CNOT7	Q9UIV1	285 aa	Known RBP	4.62	□□□□□ -1.67
SMARCE1-215	ENST00000578995	HACL1	Q9UJ83	578 aa		4.62	□□□□□ -1.67
SMARCE1-215	ENST00000578995	SERPINA10	Q9UK55	444 aa		4.62	□□□□□ -1.67
SMARCE1-215	ENST00000578995	DOLK	Q9UPQ8	538 aa		4.62	□□□□□ -1.67
SMARCE1-215	ENST00000578995	DAGLA	Q9Y4D2	1042 aa		4.62	□□□□□ -1.67
SMARCE1-215	ENST00000578995	MROH7-TTC4	A0A0A0MT08	1334 aa		4.62	□□□□□ -1.67
SMARCE1-215	ENST00000578995	PASK	Q96RG2	1323 aa		4.62	□□□□□ -1.67
SMARCE1-215	ENST00000578995	RPAP1	Q9BWH6	1393 aa	Predicted RBP	4.62	□□□□□ -1.67
SMARCE1-215	ENST00000578995	MYH6	P13533	1939 aa		4.62	□□□□□ -1.67
SMARCE1-215	ENST00000578995	ZSWIM8	A7E2V4	1837 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	GPR75-ASB3	A0A0A6YYF3	556 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	PRR19	A6NJB7	356 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995		F8W735	103 aa	Predicted RBP	4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	DLL1	O00548	723 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	PRRG2	O14669	202 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	DHX15	O43143	795 aa	Known RBP	4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	IGSF3	O75054	1194 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	WDHD1	O75717	1129 aa	Predicted RBP	4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	IFIT2	P09913	472 aa	Known RBP	4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	VEGFA	P15692	232 aa	Predicted RBP	4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	PDE6A	P16499	860 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	ADD2	P35612	726 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	MMP14	P50281	582 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	FMR1	Q06787	632 aa	Known RBP eCLIP	4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	KIF4B	Q2VIQ3	1234 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	KRTAP19-4	Q3LI73	84 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	CFAP100	Q494V2	611 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	CCDC158	Q5M9N0	1113 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	TTC39A	Q5SRH9	613 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	DLK2	Q6UY11	383 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995		Q6ZS46	218 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	USP50	Q70EL3	339 aa	Predicted RBP	4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	KBTBD3	Q8NAB2	608 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	ZNF526	Q8TF50	670 aa	Predicted RBP	4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	TEPSIN	Q96N21	525 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	BOLA2	Q9H3K6	86 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	PAG1	Q9NWQ8	432 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	MKRN1	Q9UHC7	482 aa	Known RBP	4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	TTF2	Q9UNY4	1162 aa	Known RBP	4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	NCAN	O14594	1321 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	PITPNM2	Q9BZ72	1349 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	SMCHD1	A6NHR9	2005 aa		4.61	□□□□□ -1.67
SMARCE1-215	ENST00000578995	IQCA1L	A6NCM1	817 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995		F8W031	263 aa	Predicted RBP	4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	EML1	O00423	815 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	GOLIM4	O00461	696 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	GLRX3	O76003	335 aa	Known RBP	4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	LDHB	P07195	334 aa	Known RBP	4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	ITGB5	P18084	799 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	TTC22	Q5TAA0	569 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	CDC42EP5	Q6NZY7	148 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	CBLL1	Q75N03	491 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	LDHD	Q86WU2	507 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	VPS37D	Q86XT2	251 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	CEP63	Q96MT8	703 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	GPBP1L1	Q9HC44	474 aa	Predicted RBP	4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	RTN4	Q9NQC3	1192 aa	Known RBP	4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	DDX4	Q9NQI0	724 aa	Known RBP	4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	GNL3L	Q9NVN8	582 aa	Known RBP	4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	DNAJB12	Q9NXW2	375 aa	Known RBP	4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	GGA3	Q9NZ52	723 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	SERTAD1	Q9UHV2	236 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	NAGPA	Q9UK23	515 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	ANGEL1	Q9UNK9	670 aa	Known RBP	4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	MAST3	O60307	1309 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	RBBP6	Q7Z6E9	1792 aa	Known RBP	4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	PLXNB2	O15031	1838 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995	LCT	P09848	1927 aa		4.6	□□□□□ -1.67
SMARCE1-215	ENST00000578995		A0A0D9SFI3	127 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	ADM5	C9JUS6	153 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995		H7C1D1	291 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	SMIM22	K7EJ46	135 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	TRAF5	O00463	557 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	DEAF1	O75398	565 aa	Predicted RBP	4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	TOMM70	O94826	608 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	MAP4K4	O95819	1239 aa	Predicted RBP	4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	GLB1	P16278	677 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	SDS	P20132	328 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	RFC5	P40937	340 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	BTD	P43251	543 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	DYNLL1	P63167	89 aa	Known RBP	4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	UBE3C	Q15386	1083 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	ZNF124	Q15973	351 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	PCSK7	Q16549	785 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	ZNF648	Q5T619	568 aa	Predicted RBP	4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	GORAB	Q5T7V8	394 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	CEP350	Q5VT06	3117 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	ANGEL2	Q5VTE6	544 aa	Known RBP	4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	FKBP1C	Q5VVH2	108 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	CST9	Q5W186	159 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	MAP1S	Q66K74	1059 aa	Predicted RBP	4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	RNF43	Q68DV7	783 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	TMED8	Q6PL24	325 aa	Predicted RBP	4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	ERICH6	Q7L0X2	663 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	PNMA8A	Q86V59	439 aa	Predicted RBP	4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	METTL16	Q86W50	562 aa	Known RBP	4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	TICAM2	Q86XR7	235 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	ZFPM1	Q8IX07	1006 aa		4.59	□□□□□ -1.67
SMARCE1-215	ENST00000578995	DOCK3	Q8IZD9	2030 aa		4.59	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms