RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 QRICH1Q2TAL8 776 aa22.68■■□□□ 1.22
SS18-209ENST00000578595 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.68■■□□□ 1.22
SS18-209ENST00000578595 RAB11FIP4Q86YS3 637 aa22.68■■□□□ 1.22
SS18-209ENST00000578595 CRISPLD2Q9H0B8 497 aa22.68■■□□□ 1.22
SS18-209ENST00000578595 ALPK3Q96L96 1907 aa22.67■■□□□ 1.22
SS18-209ENST00000578595 DDAH1O94760 285 aa22.67■■□□□ 1.22
SS18-209ENST00000578595 CALML3P27482 149 aa22.67■■□□□ 1.22
SS18-209ENST00000578595 ADCK5Q3MIX3 580 aa22.67■■□□□ 1.22
SS18-209ENST00000578595 FBXO11Q86XK2 927 aa22.67■■□□□ 1.22
SS18-209ENST00000578595 CCDC144CPQ8IYA2 1237 aa22.67■■□□□ 1.22
SS18-209ENST00000578595 PIBF1Q8WXW3 757 aa22.67■■□□□ 1.22
SS18-209ENST00000578595 JAKMIP1Q96N16 626 aaKnown RBP22.67■■□□□ 1.22
SS18-209ENST00000578595 MTA3Q9BTC8 594 aa22.67■■□□□ 1.22
SS18-209ENST00000578595 JMJD4Q9H9V9 463 aa22.67■■□□□ 1.22
SS18-209ENST00000578595 CYP39A1Q9NYL5 469 aa22.67■■□□□ 1.22
SS18-209ENST00000578595 NAP1L2Q9ULW6 460 aaPredicted RBP22.67■■□□□ 1.22
SS18-209ENST00000578595 ABCB11O95342 1321 aa22.66■■□□□ 1.22
SS18-209ENST00000578595 RXRAP19793 462 aa22.66■■□□□ 1.22
SS18-209ENST00000578595 KIF5BP33176 963 aa22.66■■□□□ 1.22
SS18-209ENST00000578595 BAATQ14032 418 aaPredicted RBP22.66■■□□□ 1.22
SS18-209ENST00000578595 SYNE3Q6ZMZ3 975 aa22.66■■□□□ 1.22
SS18-209ENST00000578595 TMTC2Q8N394 836 aa22.66■■□□□ 1.22
SS18-209ENST00000578595 DIS3LQ8TF46 1054 aaKnown RBP22.66■■□□□ 1.22
SS18-209ENST00000578595 PAWRQ96IZ0 340 aaKnown RBP22.66■■□□□ 1.22
SS18-209ENST00000578595 SLC12A7Q9Y666 1083 aa22.66■■□□□ 1.22
SS18-209ENST00000578595 SYNGAP1Q96PV0 1343 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 PALM3A6NDB9 673 aaPredicted RBP22.65■■□□□ 1.22
SS18-209ENST00000578595 SEPT4O43236 478 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 CAPN2P17655 700 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 HSPA4P34932 840 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 TROAPQ12815 778 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 SLC30A10Q6XR72 485 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 RNF207Q6ZRF8 634 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 ARMCX2Q7L311 632 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 NECAB2Q7Z6G3 386 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 ZNF467Q7Z7K2 595 aaPredicted RBP22.65■■□□□ 1.22
SS18-209ENST00000578595 MICU3Q86XE3 530 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 MSL3Q8N5Y2 521 aaKnown RBP22.65■■□□□ 1.22
SS18-209ENST00000578595 FAM133AQ8N9E0 248 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 ANKLE1Q8NAG6 615 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 HTATIP2Q9BUP3 242 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.65■■□□□ 1.22
SS18-209ENST00000578595 OGDHLQ9ULD0 1010 aa22.65■■□□□ 1.22
SS18-209ENST00000578595 LHX8Q68G74 356 aa22.64■■□□□ 1.21
SS18-209ENST00000578595 DHX32Q7L7V1 743 aaKnown RBP22.64■■□□□ 1.21
SS18-209ENST00000578595 DPF3Q92784 378 aa22.64■■□□□ 1.21
SS18-209ENST00000578595 SNX14Q9Y5W7 946 aa22.64■■□□□ 1.21
SS18-209ENST00000578595 SOWAHBA6NEL2 793 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 ASB14A6NK59 587 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 ZBTB5O15062 677 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 IGHA2P01877 340 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 HMGB1P09429 215 aaKnown RBP22.63■■□□□ 1.21
SS18-209ENST00000578595 CALM1P0DP23 149 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 CALM2P0DP24 149 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 CALM3P0DP25 149 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 RARBP10826 455 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 LIFRP42702 1097 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 BLOC1S2Q6QNY1 142 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 CLEC4DQ8WXI8 215 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 FGD4Q96M96 766 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 PURBQ96QR8 312 aaKnown RBP22.63■■□□□ 1.21
SS18-209ENST00000578595 PIGSQ96S52 555 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 AMNQ9BXJ7 453 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 ADD3Q9UEY8 706 aaKnown RBP22.63■■□□□ 1.21
SS18-209ENST00000578595 NRBP1Q9UHY1 535 aa22.63■■□□□ 1.21
SS18-209ENST00000578595 MRPL11Q9Y3B7 192 aaKnown RBP22.63■■□□□ 1.21
SS18-209ENST00000578595 SNAI1O95863 264 aaPredicted RBP22.62■■□□□ 1.21
SS18-209ENST00000578595 AKR1A1P14550 325 aa22.62■■□□□ 1.21
SS18-209ENST00000578595 CPA1P15085 419 aa22.62■■□□□ 1.21
SS18-209ENST00000578595 TSGA10IPQ3SY00 556 aa22.62■■□□□ 1.21
SS18-209ENST00000578595 MAMDC4Q6UXC1 1216 aa22.62■■□□□ 1.21
SS18-209ENST00000578595 EEPD1Q7L9B9 569 aa22.62■■□□□ 1.21
SS18-209ENST00000578595 LENG1Q96BZ8 264 aaPredicted RBP22.62■■□□□ 1.21
SS18-209ENST00000578595 C11orf49Q9H6J7 331 aa22.62■■□□□ 1.21
SS18-209ENST00000578595 KBTBD13C9JR72 458 aa22.61■■□□□ 1.21
SS18-209ENST00000578595 GNAQP50148 359 aa22.61■■□□□ 1.21
SS18-209ENST00000578595 RPS6P62753 249 aaKnown RBP22.61■■□□□ 1.21
SS18-209ENST00000578595 ACVR2BQ13705 512 aa22.61■■□□□ 1.21
SS18-209ENST00000578595 MCF2L2Q86YR7 1114 aa22.61■■□□□ 1.21
SS18-209ENST00000578595 MPHOSPH6Q99547 160 aaKnown RBP22.61■■□□□ 1.21
SS18-209ENST00000578595 ABHD16BQ9H3Z7 469 aa22.61■■□□□ 1.21
SS18-209ENST00000578595 XPNPEP3Q9NQH7 507 aa22.61■■□□□ 1.21
SS18-209ENST00000578595 SEC63Q9UGP8 760 aaKnown RBP22.61■■□□□ 1.21
SS18-209ENST00000578595 FAM184BQ9ULE4 1060 aa22.61■■□□□ 1.21
SS18-209ENST00000578595 PCDHA1Q9Y5I3 950 aa22.61■■□□□ 1.21
SS18-209ENST00000578595 DDX49Q9Y6V7 483 aaKnown RBP22.61■■□□□ 1.21
SS18-209ENST00000578595 CFBP00751 764 aa22.6■■□□□ 1.21
SS18-209ENST00000578595 ZNF865P0CJ78 1059 aaPredicted RBP22.6■■□□□ 1.21
SS18-209ENST00000578595 CASTP20810 708 aaKnown RBP22.6■■□□□ 1.21
SS18-209ENST00000578595 PSMA5P28066 241 aa22.6■■□□□ 1.21
SS18-209ENST00000578595 GJC2Q5T442 439 aaPredicted RBP22.6■■□□□ 1.21
SS18-209ENST00000578595 NOL8Q76FK4 1167 aaKnown RBP22.6■■□□□ 1.21
SS18-209ENST00000578595 ARRDC4Q8NCT1 418 aa22.6■■□□□ 1.21
SS18-209ENST00000578595 RRP36Q96EU6 259 aaKnown RBP22.6■■□□□ 1.21
SS18-209ENST00000578595 KIAA1217Q5T5P2 1943 aa22.59■■□□□ 1.21
SS18-209ENST00000578595 KLF18A0A0U1RQI7 1052 aa22.59■■□□□ 1.21
SS18-209ENST00000578595 PLEKHA8P1O95397 391 aa22.59■■□□□ 1.21
SS18-209ENST00000578595 ALDH5A1P51649 535 aaPredicted RBP22.59■■□□□ 1.21
SS18-209ENST00000578595 EXOSC10Q01780 885 aaKnown RBP22.59■■□□□ 1.21
SS18-209ENST00000578595 TRAF1Q13077 416 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms