RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 SHCBP1Q8NEM2 672 aa9.91□□□□□ -0.82
NUP88-211ENST00000575976 SNX21Q969T3 373 aa9.91□□□□□ -0.82
NUP88-211ENST00000575976 COA7Q96BR5 231 aa9.91□□□□□ -0.82
NUP88-211ENST00000575976 TRERF1Q96PN7 1200 aa9.91□□□□□ -0.82
NUP88-211ENST00000575976 AMNQ9BXJ7 453 aa9.91□□□□□ -0.82
NUP88-211ENST00000575976 SLC26A6Q9BXS9 759 aa9.91□□□□□ -0.82
NUP88-211ENST00000575976 RNF26Q9BY78 433 aaPredicted RBP9.91□□□□□ -0.82
NUP88-211ENST00000575976 MROH8Q9H579 483 aa9.91□□□□□ -0.82
NUP88-211ENST00000575976 HOMER2Q9NSB8 354 aa9.91□□□□□ -0.82
NUP88-211ENST00000575976 RNF146Q9NTX7 359 aa9.91□□□□□ -0.82
NUP88-211ENST00000575976 SEC63Q9UGP8 760 aaKnown RBP9.91□□□□□ -0.82
NUP88-211ENST00000575976 COL11A1P12107 1806 aaPredicted RBP9.91□□□□□ -0.82
NUP88-211ENST00000575976 JAK2O60674 1132 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 FMNL1O95466 1100 aaPredicted RBP9.9□□□□□ -0.82
NUP88-211ENST00000575976 MAPK4P31152 587 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 COPB2P35606 906 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 FCGRTP55899 365 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 AKAP17AQ02040 695 aaKnown RBP9.9□□□□□ -0.82
NUP88-211ENST00000575976 SSRP1Q08945 709 aaKnown RBP9.9□□□□□ -0.82
NUP88-211ENST00000575976 KIF22Q14807 665 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 PKN1Q16512 942 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 TKFCQ3LXA3 575 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 GPR142Q7Z601 462 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 PLEKHH3Q7Z736 793 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 NSUN7Q8NE18 718 aaKnown RBP9.9□□□□□ -0.82
NUP88-211ENST00000575976 CHST13Q8NET6 341 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 CLEC4DQ8WXI8 215 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 GPKOWQ92917 476 aaPredicted RBP eCLIP9.9□□□□□ -0.82
NUP88-211ENST00000575976 ERO1AQ96HE7 468 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 TRIM47Q96LD4 638 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 CWC22Q9HCG8 908 aaKnown RBP9.9□□□□□ -0.82
NUP88-211ENST00000575976 PNMA2Q9UL42 364 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 PCDHA1Q9Y5I3 950 aa9.9□□□□□ -0.82
NUP88-211ENST00000575976 ABCB11O95342 1321 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 PTPDC1A2A3K4 754 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 K7ELQ4 463 aaPredicted RBP9.89□□□□□ -0.83
NUP88-211ENST00000575976 NFIBO00712 420 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 TNPO2O14787 897 aaKnown RBP9.89□□□□□ -0.83
NUP88-211ENST00000575976 CDKL5O76039 1030 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 SCG2P13521 617 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 FDPSP14324 419 aaKnown RBP9.89□□□□□ -0.83
NUP88-211ENST00000575976 PTPREP23469 700 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 PFKFB3Q16875 520 aaPredicted RBP9.89□□□□□ -0.83
NUP88-211ENST00000575976 WWC2Q6AWC2 1192 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 HEATR3Q7Z4Q2 680 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 TRIM22Q8IYM9 498 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 SMARCC2Q8TAQ2 1214 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 TBC1D5Q92609 795 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 DDX11Q96FC9 970 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 MMP19Q99542 508 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 ACAD9Q9H845 621 aa9.89□□□□□ -0.83
NUP88-211ENST00000575976 RTN4Q9NQC3 1192 aaKnown RBP9.89□□□□□ -0.83
NUP88-211ENST00000575976 RBM27Q9P2N5 1060 aaKnown RBP9.89□□□□□ -0.83
NUP88-211ENST00000575976 ORC3Q9UBD5 711 aaPredicted RBP9.89□□□□□ -0.83
NUP88-211ENST00000575976 MRPL11Q9Y3B7 192 aaKnown RBP9.89□□□□□ -0.83
NUP88-211ENST00000575976 BAZ2BQ9UIF8 2168 aaKnown RBP9.88□□□□□ -0.83
NUP88-211ENST00000575976 STK36Q9NRP7 1315 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 STXBP3O00186 592 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 OPLAHO14841 1288 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 STRNO43815 780 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 DEXIO95424 95 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 FCER1AP12319 257 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 TRAF1Q13077 416 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 CUL4AQ13619 759 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 MORN1Q5T089 497 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 TYW1BQ6NUM6 668 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 NSMFQ6X4W1 530 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.88□□□□□ -0.83
NUP88-211ENST00000575976 HSCBQ8IWL3 235 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 AIFM3Q96NN9 605 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 LLPHQ9BRT6 129 aaKnown RBP9.88□□□□□ -0.83
NUP88-211ENST00000575976 A1CFQ9NQ94 594 aaKnown RBP9.88□□□□□ -0.83
NUP88-211ENST00000575976 BARHL2Q9NY43 387 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 FBXO40Q9UH90 709 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 GJD2Q9UKL4 321 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 GABRQQ9UN88 632 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 TRIM17Q9Y577 477 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 IVNS1ABPQ9Y6Y0 642 aa9.88□□□□□ -0.83
NUP88-211ENST00000575976 ZSWIM8A7E2V4 1837 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 SLC15A5A6NIM6 579 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 hCG_1984214I3L0E3 225 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 DLL1O00548 723 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 COBLO75128 1261 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 HOXD10P28358 340 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 ADORA2AP29274 412 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 NAPAP54920 295 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 PRKCZQ05513 592 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 MAP2K5Q13163 448 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 BAATQ14032 418 aaPredicted RBP9.87□□□□□ -0.83
NUP88-211ENST00000575976 GRB14Q14449 540 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 KCTD2Q14681 263 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 ARHGEF6Q15052 776 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 RNF207Q6ZRF8 634 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 OTOP1Q7RTM1 612 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 MCF2L2Q86YR7 1114 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 ABRAQ8N0Z2 381 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 ANKRD35Q8N283 1001 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 ZNF713Q8N859 430 aaPredicted RBP9.87□□□□□ -0.83
NUP88-211ENST00000575976 USP6NLQ92738 828 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 SHISA4Q96DD7 197 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms