RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 FERMT2Q96AC1 680 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 C12orf42Q96LP6 360 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 TSEN34Q9BSV6 310 aaKnown RBP7.19□□□□□ -1.26
VPS53-208ENST00000570650 HCN4Q9Y3Q4 1203 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 NCOR1O75376 2440 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 DNAH12Q6ZR08 3092 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 GDF11O95390 407 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 SCTRP47872 440 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 RELBQ01201 579 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 MVPQ14764 893 aaKnown RBP7.18□□□□□ -1.26
VPS53-208ENST00000570650 SHROOM1Q2M3G4 852 aaPredicted RBP7.18□□□□□ -1.26
VPS53-208ENST00000570650 CATSPERGQ6ZRH7 1159 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 DPP9Q86TI2 863 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 METTL16Q86W50 562 aaKnown RBP7.18□□□□□ -1.26
VPS53-208ENST00000570650 SH3RF3Q8TEJ3 882 aaPredicted RBP7.18□□□□□ -1.26
VPS53-208ENST00000570650 ZNF592Q92610 1267 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 CLUAP1Q96AJ1 413 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 NSUN4Q96CB9 384 aaKnown RBP7.18□□□□□ -1.26
VPS53-208ENST00000570650 FEZ1Q99689 392 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 NOL10Q9BSC4 688 aaKnown RBP7.18□□□□□ -1.26
VPS53-208ENST00000570650 PRDM12Q9H4Q4 367 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 DNAJC18Q9H819 358 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 TMEM39AQ9NV64 488 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 BTBD7Q9P203 1132 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 PHF24Q9UPV7 400 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 PCDHB11Q9Y5F2 797 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 PTPRCP08575 1304 aa7.18□□□□□ -1.26
VPS53-208ENST00000570650 SIPA1L1O43166 1804 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 A0A1B0GUL7 405 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 STRNO43815 780 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 RAD21O60216 631 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 PQBP1O60828 265 aaKnown RBP7.17□□□□□ -1.26
VPS53-208ENST00000570650 UPP2O95045 317 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 ADH1AP07327 375 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 ADORA2AP29274 412 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 USP14P54578 494 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 TIMM10P62072 90 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 CCDC85BQ15834 202 aaPredicted RBP7.17□□□□□ -1.26
VPS53-208ENST00000570650 ZYXQ15942 572 aaKnown RBP7.17□□□□□ -1.26
VPS53-208ENST00000570650 TSGA10IPQ3SY00 556 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 FAM47AQ5JRC9 791 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 RNF20Q5VTR2 975 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 CCDC174Q6PII3 467 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 CCDC129Q6ZRS4 1044 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 PHTF2Q8N3S3 785 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 XAGE2Q96GT9 111 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 NECAB3Q96P71 396 aaPredicted RBP7.17□□□□□ -1.26
VPS53-208ENST00000570650 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS53-208ENST00000570650 PBX4Q9BYU1 374 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 SLC5A4Q9NY91 659 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 RAI14Q9P0K7 980 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 HMG20BQ9P0W2 317 aa7.17□□□□□ -1.26
VPS53-208ENST00000570650 PA2G4Q9UQ80 394 aaKnown RBP7.17□□□□□ -1.26
VPS53-208ENST00000570650 ZNF236Q9UL36 1845 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 POM121CA8CG34 1229 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 BAG3O95817 575 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 GH2P01242 217 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 HLA-DOAP06340 250 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 RARBP10826 455 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 VCAM1P19320 739 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 IGFBP4P22692 258 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 ADGRE1Q14246 886 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 RAB30Q15771 203 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 AAK1Q2M2I8 961 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 CCDC184Q52MB2 194 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 PRAMEF19Q5SWL8 479 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 ATF7IPQ6VMQ6 1270 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 TBC1D9Q6ZT07 1266 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 RNF180Q86T96 592 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 MAPKAPK5Q8IW41 473 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 SPATA5Q8NB90 893 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 SLC44A5Q8NCS7 719 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 TGFBRAP1Q8WUH2 860 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 LRFN3Q9BTN0 628 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 MOV10L1Q9BXT6 1211 aaKnown RBP7.16□□□□□ -1.26
VPS53-208ENST00000570650 KIAA1683Q9H0B3 1180 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 ZNF395Q9H8N7 513 aaPredicted RBP7.16□□□□□ -1.26
VPS53-208ENST00000570650 COPRSQ9NQ92 184 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 XPNPEP3Q9NQH7 507 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 AATFQ9NY61 560 aaKnown RBP eCLIP7.16□□□□□ -1.26
VPS53-208ENST00000570650 CXXC1Q9P0U4 656 aaPredicted RBP7.16□□□□□ -1.26
VPS53-208ENST00000570650 AKAP2Q9Y2D5 859 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 FLT1P17948 1338 aa7.16□□□□□ -1.26
VPS53-208ENST00000570650 TCF20Q9UGU0 1960 aaKnown RBP7.15□□□□□ -1.26
VPS53-208ENST00000570650 A0A1W2PQ45 241 aaPredicted RBP7.15□□□□□ -1.26
VPS53-208ENST00000570650 A0A1W2PQY0 241 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 GRXCR1A8MXD5 290 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 DCDC2CA8MYV0 355 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 SPINT1O43278 529 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 COBLO75128 1261 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 TIMP1P01033 207 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 UBTFL1P0CB47 393 aaPredicted RBP7.15□□□□□ -1.26
VPS53-208ENST00000570650 FAAP100Q0VG06 881 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 PPIGQ13427 754 aaKnown RBP eCLIP7.15□□□□□ -1.267e-7■□□□□ 11.2
VPS53-208ENST00000570650 TMEM31Q5JXX7 168 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 RASIP1Q5U651 963 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 NAA16Q6N069 864 aaPredicted RBP7.15□□□□□ -1.26
VPS53-208ENST00000570650 MFSD5Q6N075 450 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 PI16Q6UXB8 463 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 ANKRD33Q7Z3H0 272 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms