RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 LCHNA4D1U4 455 aa21.78■■□□□ 1.08
CLK3-227ENST00000570296 ZBED4O75132 1171 aa21.78■■□□□ 1.08
CLK3-227ENST00000570296 SMPD1P17405 629 aa21.78■■□□□ 1.08
CLK3-227ENST00000570296 SLC4A3P48751 1232 aa21.78■■□□□ 1.08
CLK3-227ENST00000570296 SLFN5Q08AF3 891 aa21.78■■□□□ 1.08
CLK3-227ENST00000570296 NEK9Q8TD19 979 aa21.78■■□□□ 1.08
CLK3-227ENST00000570296 TLR7Q9NYK1 1049 aaKnown RBP21.78■■□□□ 1.08
CLK3-227ENST00000570296 FAM50BQ9Y247 325 aa21.78■■□□□ 1.08
CLK3-227ENST00000570296 CTDP1Q9Y5B0 961 aaPredicted RBP21.78■■□□□ 1.08
CLK3-227ENST00000570296 ASB14A6NK59 587 aa21.77■■□□□ 1.08
CLK3-227ENST00000570296 IQCF3P0C7M6 154 aa21.77■■□□□ 1.08
CLK3-227ENST00000570296 CDK8P49336 464 aa21.77■■□□□ 1.08
CLK3-227ENST00000570296 PTPN5P54829 565 aa21.77■■□□□ 1.08
CLK3-227ENST00000570296 ERVK-21P61565 698 aa21.77■■□□□ 1.08
CLK3-227ENST00000570296 ZP2Q05996 745 aa21.77■■□□□ 1.08
CLK3-227ENST00000570296 FAM133AQ8N9E0 248 aa21.77■■□□□ 1.08
CLK3-227ENST00000570296 RETREG2Q8NC44 543 aa21.77■■□□□ 1.08
CLK3-227ENST00000570296 TGS1Q96RS0 853 aaKnown RBP21.77■■□□□ 1.08
CLK3-227ENST00000570296 UPF3BQ9BZI7 483 aaKnown RBP21.77■■□□□ 1.08
CLK3-227ENST00000570296 TECTAO75443 2155 aa21.77■■□□□ 1.07
CLK3-227ENST00000570296 SCN10AQ9Y5Y9 1956 aa21.76■■□□□ 1.07
CLK3-227ENST00000570296 CT47B1P0C2W7 299 aaPredicted RBP21.76■■□□□ 1.07
CLK3-227ENST00000570296 CNTN2Q02246 1040 aa21.76■■□□□ 1.07
CLK3-227ENST00000570296 IQSEC1Q6DN90 963 aa21.76■■□□□ 1.07
CLK3-227ENST00000570296 ARHGAP45Q92619 1136 aa21.76■■□□□ 1.07
CLK3-227ENST00000570296 ANKS1AQ92625 1134 aa21.76■■□□□ 1.07
CLK3-227ENST00000570296 NUP88Q99567 741 aaPredicted RBP21.76■■□□□ 1.07
CLK3-227ENST00000570296 SLC38A10Q9HBR0 1119 aa21.76■■□□□ 1.07
CLK3-227ENST00000570296 GREB1LQ9C091 1923 aaPredicted RBP21.76■■□□□ 1.07
CLK3-227ENST00000570296 PTPRZ1P23471 2315 aaPredicted RBP21.75■■□□□ 1.07
CLK3-227ENST00000570296 C19orf67A6NJJ6 358 aa21.75■■□□□ 1.07
CLK3-227ENST00000570296 PDE6AP16499 860 aa21.75■■□□□ 1.07
CLK3-227ENST00000570296 OAZ1P54368 228 aa21.75■■□□□ 1.07
CLK3-227ENST00000570296 POLA2Q14181 598 aa21.75■■□□□ 1.07
CLK3-227ENST00000570296 C16orf86Q6ZW13 317 aa21.75■■□□□ 1.07
CLK3-227ENST00000570296 PRSS33Q8NF86 280 aa21.75■■□□□ 1.07
CLK3-227ENST00000570296 PRRX2Q99811 253 aa21.75■■□□□ 1.07
CLK3-227ENST00000570296 ZBED2Q9BTP6 218 aa21.75■■□□□ 1.07
CLK3-227ENST00000570296 CCDC8Q9H0W5 538 aaPredicted RBP21.75■■□□□ 1.07
CLK3-227ENST00000570296 RAVER2Q9HCJ3 691 aaKnown RBP21.75■■□□□ 1.07
CLK3-227ENST00000570296 POLR3EQ9NVU0 708 aa21.75■■□□□ 1.07
CLK3-227ENST00000570296 PTGS1P23219 599 aa21.74■■□□□ 1.07
CLK3-227ENST00000570296 WDR5P61964 334 aaKnown RBP21.74■■□□□ 1.07
CLK3-227ENST00000570296 TTF1Q15361 905 aaPredicted RBP21.74■■□□□ 1.07
CLK3-227ENST00000570296 SLC9C2Q5TAH2 1124 aa21.74■■□□□ 1.07
CLK3-227ENST00000570296 FAM9BQ8IZU0 186 aa21.74■■□□□ 1.07
CLK3-227ENST00000570296 LCORLQ8N3X6 602 aa21.74■■□□□ 1.07
CLK3-227ENST00000570296 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.74■■□□□ 1.07
CLK3-227ENST00000570296 MTUS1Q9ULD2 1270 aa21.74■■□□□ 1.07
CLK3-227ENST00000570296 TRIP12Q14669 1992 aaPredicted RBP21.74■■□□□ 1.07
CLK3-227ENST00000570296 BFSP2Q13515 415 aa21.73■■□□□ 1.07
CLK3-227ENST00000570296 C12orf60Q5U649 245 aa21.73■■□□□ 1.07
CLK3-227ENST00000570296 ADHFE1Q8IWW8 467 aa21.73■■□□□ 1.07
CLK3-227ENST00000570296 EAF2Q96CJ1 260 aaPredicted RBP21.73■■□□□ 1.07
CLK3-227ENST00000570296 ATP8A2Q9NTI2 1148 aa21.73■■□□□ 1.07
CLK3-227ENST00000570296 USP17L12C9JPN9 530 aa21.72■■□□□ 1.07
CLK3-227ENST00000570296 USP17L21D6R901 530 aa21.72■■□□□ 1.07
CLK3-227ENST00000570296 SURF6O75683 361 aaKnown RBP21.72■■□□□ 1.07
CLK3-227ENST00000570296 LRRFIP1Q32MZ4 808 aaKnown RBP21.72■■□□□ 1.07
CLK3-227ENST00000570296 TAPT1Q6NXT6 567 aa21.72■■□□□ 1.07
CLK3-227ENST00000570296 AMOTL1Q8IY63 956 aa21.72■■□□□ 1.07
CLK3-227ENST00000570296 SSH3Q8TE77 659 aa21.72■■□□□ 1.07
CLK3-227ENST00000570296 RAD9AQ99638 391 aa21.72■■□□□ 1.07
CLK3-227ENST00000570296 ACAD9Q9H845 621 aa21.72■■□□□ 1.07
CLK3-227ENST00000570296 PDGFCQ9NRA1 345 aa21.72■■□□□ 1.07
CLK3-227ENST00000570296 C5orf42Q9H799 3197 aa21.71■■□□□ 1.07
CLK3-227ENST00000570296 LINC01553A4QN01 128 aa21.71■■□□□ 1.07
CLK3-227ENST00000570296 SOWAHBA6NEL2 793 aa21.71■■□□□ 1.07
CLK3-227ENST00000570296 F5H6K3 240 aa21.71■■□□□ 1.07
CLK3-227ENST00000570296 H3BQ06 376 aaPredicted RBP21.71■■□□□ 1.07
CLK3-227ENST00000570296 NDUFB10O96000 172 aa21.71■■□□□ 1.07
CLK3-227ENST00000570296 PURAQ00577 322 aaKnown RBP21.71■■□□□ 1.07
CLK3-227ENST00000570296 KLRC3Q07444 240 aa21.71■■□□□ 1.07
CLK3-227ENST00000570296 KIFC2Q96AC6 838 aa21.71■■□□□ 1.07
CLK3-227ENST00000570296 CTNNA3Q9UI47 895 aa21.71■■□□□ 1.07
CLK3-227ENST00000570296 ZNF532Q9HCE3 1301 aa21.71■■□□□ 1.07
CLK3-227ENST00000570296 GFRA3O60609 400 aa21.7■■□□□ 1.06
CLK3-227ENST00000570296 GJB5O95377 273 aa21.7■■□□□ 1.06
CLK3-227ENST00000570296 PKN1Q16512 942 aa21.7■■□□□ 1.06
CLK3-227ENST00000570296 HERC4Q5GLZ8 1057 aaPredicted RBP21.7■■□□□ 1.06
CLK3-227ENST00000570296 NFRKBQ6P4R8 1299 aa21.7■■□□□ 1.06
CLK3-227ENST00000570296 MRPL38Q96DV4 380 aaKnown RBP21.7■■□□□ 1.06
CLK3-227ENST00000570296 MTG1Q9BT17 334 aaPredicted RBP21.7■■□□□ 1.06
CLK3-227ENST00000570296 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.7■■□□□ 1.06
CLK3-227ENST00000570296 VTA1Q9NP79 307 aa21.7■■□□□ 1.06
CLK3-227ENST00000570296 A1CFQ9NQ94 594 aaKnown RBP21.7■■□□□ 1.06
CLK3-227ENST00000570296 HOMER2Q9NSB8 354 aa21.7■■□□□ 1.06
CLK3-227ENST00000570296 COG6Q9Y2V7 657 aa21.7■■□□□ 1.06
CLK3-227ENST00000570296 RIF1Q5UIP0 2472 aaKnown RBP21.69■■□□□ 1.06
CLK3-227ENST00000570296 MYH4Q9Y623 1939 aa21.69■■□□□ 1.06
CLK3-227ENST00000570296 TCRBV5S4A2TA0A5A2 114 aa21.69■■□□□ 1.06
CLK3-227ENST00000570296 CPT1AP50416 773 aa21.69■■□□□ 1.06
CLK3-227ENST00000570296 DUSP28Q4G0W2 176 aa21.69■■□□□ 1.06
CLK3-227ENST00000570296 TIGD5Q53EQ6 642 aa21.69■■□□□ 1.06
CLK3-227ENST00000570296 FAM47CQ5HY64 1035 aa21.69■■□□□ 1.06
CLK3-227ENST00000570296 BMP8AQ7Z5Y6 402 aa21.69■■□□□ 1.06
CLK3-227ENST00000570296 TMCO2Q7Z6W1 182 aaPredicted RBP21.69■■□□□ 1.06
CLK3-227ENST00000570296 FBXO16Q8IX29 292 aaPredicted RBP21.69■■□□□ 1.06
CLK3-227ENST00000570296 PABPC5Q96DU9 382 aaKnown RBP21.69■■□□□ 1.06
CLK3-227ENST00000570296 NYAP2Q9P242 653 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms