RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ZSCAN31Q96LW9 406 aaPredicted RBP10.77□□□□□ -0.69
VPS35-211ENST00000569950 RNF26Q9BY78 433 aaPredicted RBP10.77□□□□□ -0.69
VPS35-211ENST00000569950 TSHZ2Q9NRE2 1034 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 SH2B1Q9NRF2 756 aaPredicted RBP10.77□□□□□ -0.69
VPS35-211ENST00000569950 GJB4Q9NTQ9 266 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 GJD2Q9UKL4 321 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 NAP1L2Q9ULW6 460 aaPredicted RBP10.77□□□□□ -0.69
VPS35-211ENST00000569950 MYH7BA7E2Y1 1941 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 STK36Q9NRP7 1315 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 DNAJC25-GNG10A0A024R161 153 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 CCDC196A0A1B0GTZ2 297 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 PTPDC1A2A3K4 754 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 STXBP3O00186 592 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 ZBED4O75132 1171 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 MCM2P49736 904 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 SP3Q02447 781 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 IKQ13123 557 aaPredicted RBP10.76□□□□□ -0.69
VPS35-211ENST00000569950 MORN1Q5T089 497 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 GPR142Q7Z601 462 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 FBXO11Q86XK2 927 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 COL20A1Q9P218 1284 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 CCPG1Q9ULG6 757 aa10.76□□□□□ -0.69
VPS35-211ENST00000569950 ISY1Q9ULR0 285 aaKnown RBP10.76□□□□□ -0.69
VPS35-211ENST00000569950 K7ELQ4 463 aaPredicted RBP10.75□□□□□ -0.69
VPS35-211ENST00000569950 COBLO75128 1261 aa10.75□□□□□ -0.69
VPS35-211ENST00000569950 SCG2P13521 617 aa10.75□□□□□ -0.69
VPS35-211ENST00000569950 USH1GQ495M9 461 aa10.75□□□□□ -0.69
VPS35-211ENST00000569950 CD99L2Q8TCZ2 262 aa10.75□□□□□ -0.69
VPS35-211ENST00000569950 RRP36Q96EU6 259 aaKnown RBP10.75□□□□□ -0.69
VPS35-211ENST00000569950 TRERF1Q96PN7 1200 aa10.75□□□□□ -0.69
VPS35-211ENST00000569950 PURBQ96QR8 312 aaKnown RBP10.75□□□□□ -0.69
VPS35-211ENST00000569950 LLPHQ9BRT6 129 aaKnown RBP10.75□□□□□ -0.69
VPS35-211ENST00000569950 AMNQ9BXJ7 453 aa10.75□□□□□ -0.69
VPS35-211ENST00000569950 SLC26A6Q9BXS9 759 aa10.75□□□□□ -0.69
VPS35-211ENST00000569950 A1CFQ9NQ94 594 aaKnown RBP10.75□□□□□ -0.69
VPS35-211ENST00000569950 RNF146Q9NTX7 359 aa10.75□□□□□ -0.69
VPS35-211ENST00000569950 BARHL2Q9NY43 387 aa10.75□□□□□ -0.69
VPS35-211ENST00000569950 KIAA1217Q5T5P2 1943 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 MEIS2O14770 477 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 EDIL3O43854 480 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 DHX16O60231 1041 aaKnown RBP10.74□□□□□ -0.69
VPS35-211ENST00000569950 FKTNO75072 461 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 SLC25A27O95847 323 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 ALAS1P13196 640 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 PTPREP23469 700 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 HSD17B4P51659 736 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 GRB14Q14449 540 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 PLS1Q14651 629 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 TKFCQ3LXA3 575 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 SLC30A10Q6XR72 485 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 CHST13Q8NET6 341 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 MROH8Q9H579 483 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 HOMER2Q9NSB8 354 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 GABRQQ9UN88 632 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 PCDHA1Q9Y5I3 950 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 DDX49Q9Y6V7 483 aaKnown RBP10.74□□□□□ -0.69
VPS35-211ENST00000569950 ABCB11O95342 1321 aa10.74□□□□□ -0.69
VPS35-211ENST00000569950 SOWAHBA6NEL2 793 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 M0R2N6 131 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 ECM2O94769 699 aaPredicted RBP10.73□□□□□ -0.69
VPS35-211ENST00000569950 DEXIO95424 95 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 MAPK4P31152 587 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 PSMC4P43686 418 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 CLK2P49760 499 aaKnown RBP10.73□□□□□ -0.69
VPS35-211ENST00000569950 LBX1P52954 281 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 SSRP1Q08945 709 aaKnown RBP10.73□□□□□ -0.69
VPS35-211ENST00000569950 ZNF792Q3KQV3 632 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 PLEKHH3Q7Z736 793 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 NCAPG2Q86XI2 1143 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 FAM133AQ8N9E0 248 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 RGS22Q8NE09 1264 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 DDX11Q96FC9 970 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 ACAD9Q9H845 621 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 CYP39A1Q9NYL5 469 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 VPS54Q9P1Q0 977 aa10.73□□□□□ -0.69
VPS35-211ENST00000569950 ORC3Q9UBD5 711 aaPredicted RBP10.73□□□□□ -0.69
VPS35-211ENST00000569950 ESYT2A0FGR8 921 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 CPLX1O14810 134 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 PGK2P07205 417 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 HOXC6P09630 235 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 ADORA2AP29274 412 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 RPS6P62753 249 aaKnown RBP10.72□□□□□ -0.69
VPS35-211ENST00000569950 CCNA1P78396 465 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 CNTN2Q02246 1040 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 PRKCZQ05513 592 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 PPP1R18Q6NYC8 613 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 USP17L6PQ6QN14 398 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 OTOP1Q7RTM1 612 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 HEATR3Q7Z4Q2 680 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 ABRAQ8N0Z2 381 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 NPLOC4Q8TAT6 608 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 SYTL5Q8TDW5 730 aaPredicted RBP10.72□□□□□ -0.69
VPS35-211ENST00000569950 CRYGNQ8WXF5 182 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 TNFRSF25Q93038 417 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 PHF20Q9BVI0 1012 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 ZMYND12Q9H0C1 365 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 FLRT1Q9NZU1 646 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 FRMPD4Q14CM0 1322 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 FRMPD3Q5JV73 1810 aa10.72□□□□□ -0.69
VPS35-211ENST00000569950 MYH15Q9Y2K3 1946 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms