RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 PALLDQ8WX93 1383 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 TULP2O00295 520 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 POLR2FP61218 127 aaKnown RBP12.62□□□□□ -0.39
CLN3-238ENST00000569430 PPP2R5BQ15173 497 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 SFMBT2Q5VUG0 894 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 IGDCC4Q8TDY8 1250 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 KCNK9Q9NPC2 374 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 MON2Q7Z3U7 1717 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 ECM2O94769 699 aaPredicted RBP12.62□□□□□ -0.39
CLN3-238ENST00000569430 KIF4AO95239 1232 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 KRT14P02533 472 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 PCCAP05165 728 aaPredicted RBP12.62□□□□□ -0.39
CLN3-238ENST00000569430 GOLGA8HP0CJ92 632 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 GUCY2CP25092 1073 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 ZNF76P36508 570 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 LRRC41Q15345 812 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 EHD4Q9H223 541 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 KCND1Q9NSA2 647 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 DUSP10Q9Y6W6 482 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 RFX7Q2KHR2 1363 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 NBPF26B4DH59 902 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 ACTN4O43707 911 aaKnown RBP12.62□□□□□ -0.39
CLN3-238ENST00000569430 PPP1R12BO60237 982 aaPredicted RBP12.62□□□□□ -0.39
CLN3-238ENST00000569430 KIF11P52732 1056 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 TFAP4Q01664 338 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 NBPF10Q6P3W6 841 aaKnown RBP12.62□□□□□ -0.39
CLN3-238ENST00000569430 CCNI2Q6ZMN8 369 aaPredicted RBP12.62□□□□□ -0.39
CLN3-238ENST00000569430 NBPF15Q8N660 670 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 MSANTD4Q8NCY6 345 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 AGXT2Q9BYV1 514 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 PCDHA13Q9Y5I0 950 aa12.62□□□□□ -0.39
CLN3-238ENST00000569430 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.62□□□□□ -0.39
CLN3-238ENST00000569430 CEMIPQ8WUJ3 1361 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 LGALS16A8MUM7 142 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 SEMA3EO15041 775 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 ABL1P00519 1130 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 IL2RBP14784 551 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 FNBP4Q8N3X1 1017 aaPredicted RBP12.61□□□□□ -0.39
CLN3-238ENST00000569430 TTLL11Q8NHH1 800 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 ERBB3P21860 1342 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 DYNLL1P63167 89 aaKnown RBP12.61□□□□□ -0.39
CLN3-238ENST00000569430 RASGRF1Q13972 1273 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 GIGYF2Q6Y7W6 1299 aaKnown RBP12.61□□□□□ -0.39
CLN3-238ENST00000569430 TCP11Q8WWU5 503 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 N4BP2L2Q92802 583 aaPredicted RBP12.61□□□□□ -0.39
CLN3-238ENST00000569430 P2RX5Q93086 422 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 MAP3K14Q99558 947 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 VEZTQ9HBM0 779 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 TCEAL9Q9UHQ7 104 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 ANKARQ7Z5J8 1434 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 PEX19P40855 299 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 KSR1Q8IVT5 923 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 SPATA4Q8NEY3 305 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 CCDC26Q8TAB7 109 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 MGARPQ8TDB4 240 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 LSM14BQ9BX40 385 aaKnown RBP12.61□□□□□ -0.39
CLN3-238ENST00000569430 EHD2Q9NZN4 543 aa12.61□□□□□ -0.39
CLN3-238ENST00000569430 UBR1Q8IWV7 1749 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 MAP2K7O14733 419 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 IFNAR2P48551 515 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 TOB1P50616 345 aaPredicted RBP12.6□□□□□ -0.39
CLN3-238ENST00000569430 ASIC2Q16515 512 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 HERC4Q5GLZ8 1057 aaPredicted RBP12.6□□□□□ -0.39
CLN3-238ENST00000569430 GKAP1Q5VSY0 366 aaPredicted RBP12.6□□□□□ -0.39
CLN3-238ENST00000569430 PEX26Q7Z412 305 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 MICAL1Q8TDZ2 1067 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 SNX29Q8TEQ0 813 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 SAP30BPQ9UHR5 308 aaKnown RBP12.6□□□□□ -0.39
CLN3-238ENST00000569430 UTYO14607 1347 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 MYO1FO00160 1098 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 ZNF18P17022 549 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 LONP1P36776 959 aaKnown RBP12.6□□□□□ -0.39
CLN3-238ENST00000569430 CCDC170Q8IYT3 715 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 TAOK3Q9H2K8 898 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 ZNF287Q9HBT7 754 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 SALL1Q9NSC2 1324 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 KRIT1O00522 736 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 GNA11P29992 359 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 SEC24CP53992 1094 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 SNCBQ16143 134 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 EMBQ6PCB8 327 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 SGMS1Q86VZ5 419 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 SEC31BQ9NQW1 1179 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 TFCP2L1Q9NZI6 479 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 PACSIN2Q9UNF0 486 aaPredicted RBP12.6□□□□□ -0.39
CLN3-238ENST00000569430 STK38LQ9Y2H1 464 aa12.6□□□□□ -0.39
CLN3-238ENST00000569430 ANKRD62A6NC57 917 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 SLC20A2Q08357 652 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 TBX2Q13207 712 aaPredicted RBP12.59□□□□□ -0.39
CLN3-238ENST00000569430 ALS2CLQ60I27 953 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 RPAINQ86UA6 219 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 ATG3Q9NT62 314 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 HNRNPH1P31943 449 aaKnown RBP12.59□□□□□ -0.39
CLN3-238ENST00000569430 NONOQ15233 471 aaKnown RBP eCLIP12.59□□□□□ -0.39
CLN3-238ENST00000569430 EZH2Q15910 746 aaKnown RBP12.59□□□□□ -0.39
CLN3-238ENST00000569430 LMBR1Q8WVP7 490 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 TBC1D5Q92609 795 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 MS4A14Q96JA4 679 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 OSBPL9Q96SU4 736 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 LACRTQ9GZZ8 138 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms