RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 NAV1Q8NEY1 1877 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 MYO7AQ13402 2215 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 IQCF3P0C7M6 154 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 PTGS1P23219 599 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 USP5P45974 858 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 ZXDAP98168 799 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 TNFAIP2Q03169 654 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 TCEAL5Q5H9L2 206 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 NOL8Q76FK4 1167 aaKnown RBP13.7□□□□□ -0.22
CDH3-208ENST00000569036 TTC6Q86TZ1 520 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 CLEC10AQ8IUN9 316 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 FBXO22Q8NEZ5 403 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 NEUROD6Q96NK8 337 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 CNTNAP3BQ96NU0 1288 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 RAD9AQ99638 391 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 CNTNAP3Q9BZ76 1288 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 VCPKMTQ9H867 229 aa13.7□□□□□ -0.22
CDH3-208ENST00000569036 MYH8P13535 1937 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 PITPNM1O00562 1244 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 ZEB2O60315 1214 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 GJB5O95377 273 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 AVPR2P30518 371 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 NBL1P41271 181 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 PLCD1P51178 756 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 GORABQ5T7V8 394 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 BANK1Q8NDB2 785 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.69□□□□□ -0.22
CDH3-208ENST00000569036 C17orf80Q9BSJ5 609 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 CLDND1Q9NY35 253 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 CTNNA3Q9UI47 895 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 PPP1R9AQ9ULJ8 1098 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 ATRXP46100 2492 aa13.69□□□□□ -0.22
CDH3-208ENST00000569036 TRIP12Q14669 1992 aaPredicted RBP13.69□□□□□ -0.22
CDH3-208ENST00000569036 MBTPS2O43462 519 aa13.68□□□□□ -0.22
CDH3-208ENST00000569036 LTBRP36941 435 aa13.68□□□□□ -0.22
CDH3-208ENST00000569036 GABPAQ06546 454 aa13.68□□□□□ -0.22
CDH3-208ENST00000569036 CLUL1Q15846 466 aa13.68□□□□□ -0.22
CDH3-208ENST00000569036 PTPROQ16827 1216 aa13.68□□□□□ -0.22
CDH3-208ENST00000569036 SIAH1Q8IUQ4 282 aa13.68□□□□□ -0.22
CDH3-208ENST00000569036 CCDC144CPQ8IYA2 1237 aa13.68□□□□□ -0.22
CDH3-208ENST00000569036 AP5M1Q9H0R1 490 aa13.68□□□□□ -0.22
CDH3-208ENST00000569036 SNRKQ9NRH2 765 aa13.68□□□□□ -0.22
CDH3-208ENST00000569036 TMX2Q9Y320 296 aa13.68□□□□□ -0.22
CDH3-208ENST00000569036 RIPK3Q9Y572 518 aa13.68□□□□□ -0.22
CDH3-208ENST00000569036 STXBP3O00186 592 aa13.67□□□□□ -0.22
CDH3-208ENST00000569036 DYNC1LI2O43237 492 aaPredicted RBP13.67□□□□□ -0.22
CDH3-208ENST00000569036 SNRNP48Q6IEG0 339 aaKnown RBP13.67□□□□□ -0.22
CDH3-208ENST00000569036 TMEM179Q6ZVK1 233 aa13.67□□□□□ -0.22
CDH3-208ENST00000569036 RPAINQ86UA6 219 aa13.67□□□□□ -0.22
CDH3-208ENST00000569036 ADSSL1Q8N142 457 aa13.67□□□□□ -0.22
CDH3-208ENST00000569036 RETREG2Q8NC44 543 aa13.67□□□□□ -0.22
CDH3-208ENST00000569036 ANP32EQ9BTT0 268 aa13.67□□□□□ -0.22
CDH3-208ENST00000569036 TEX13BQ9BXU2 312 aa13.67□□□□□ -0.22
CDH3-208ENST00000569036 ARHGEF10LQ9HCE6 1279 aa13.67□□□□□ -0.22
CDH3-208ENST00000569036 SCN10AQ9Y5Y9 1956 aa13.67□□□□□ -0.22
CDH3-208ENST00000569036 FRYLO94915 3013 aa13.66□□□□□ -0.22
CDH3-208ENST00000569036 CCER2I3L3R5 266 aa13.66□□□□□ -0.22
CDH3-208ENST00000569036 KDM4AO75164 1064 aa13.66□□□□□ -0.22
CDH3-208ENST00000569036 UQCRFS1P1P0C7P4 283 aa13.66□□□□□ -0.22
CDH3-208ENST00000569036 EVX2Q03828 476 aa13.66□□□□□ -0.22
CDH3-208ENST00000569036 DGLUCYQ7Z3D6 616 aa13.66□□□□□ -0.22
CDH3-208ENST00000569036 MIGA1Q8NAN2 632 aa13.66□□□□□ -0.22
CDH3-208ENST00000569036 ASIC4Q96FT7 647 aa13.66□□□□□ -0.22
CDH3-208ENST00000569036 CRBNQ96SW2 442 aa13.66□□□□□ -0.22
CDH3-208ENST00000569036 NSUN3Q9H649 340 aaKnown RBP13.66□□□□□ -0.22
CDH3-208ENST00000569036 SH2D4AQ9H788 454 aa13.66□□□□□ -0.22
CDH3-208ENST00000569036 PTPRCP08575 1304 aa13.65□□□□□ -0.22
CDH3-208ENST00000569036 EP300Q09472 2414 aaPredicted RBP13.65□□□□□ -0.22
CDH3-208ENST00000569036 MAP1BP46821 2468 aaKnown RBP13.65□□□□□ -0.22
CDH3-208ENST00000569036 GALR2O43603 387 aaPredicted RBP13.65□□□□□ -0.22
CDH3-208ENST00000569036 CYP2E1P05181 493 aaPredicted RBP13.65□□□□□ -0.22
CDH3-208ENST00000569036 UBTFL1P0CB47 393 aaPredicted RBP13.65□□□□□ -0.22
CDH3-208ENST00000569036 SMPD1P17405 629 aa13.65□□□□□ -0.22
CDH3-208ENST00000569036 CYP7A1P22680 504 aa13.65□□□□□ -0.22
CDH3-208ENST00000569036 ICA1Q05084 483 aa13.65□□□□□ -0.22
CDH3-208ENST00000569036 DLX2Q07687 328 aaPredicted RBP13.65□□□□□ -0.22
CDH3-208ENST00000569036 SIGLEC14Q08ET2 396 aa13.65□□□□□ -0.22
CDH3-208ENST00000569036 SMAD4Q13485 552 aaKnown RBP13.65□□□□□ -0.22
CDH3-208ENST00000569036 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.65□□□□□ -0.22
CDH3-208ENST00000569036 WDR63Q8IWG1 891 aa13.65□□□□□ -0.22
CDH3-208ENST00000569036 RMDN1Q96DB5 314 aa13.65□□□□□ -0.22
CDH3-208ENST00000569036 NLRC5Q86WI3 1866 aa13.65□□□□□ -0.22
CDH3-208ENST00000569036 NUBP1P53384 320 aa13.64□□□□□ -0.23
CDH3-208ENST00000569036 BFSP2Q13515 415 aa13.64□□□□□ -0.23
CDH3-208ENST00000569036 GPNMBQ14956 572 aa13.64□□□□□ -0.23
CDH3-208ENST00000569036 CTC1Q2NKJ3 1217 aa13.64□□□□□ -0.23
CDH3-208ENST00000569036 FAM117BQ6P1L5 589 aa13.64□□□□□ -0.23
CDH3-208ENST00000569036 MRPL50Q8N5N7 158 aaKnown RBP13.64□□□□□ -0.23
CDH3-208ENST00000569036 NKD2Q969F2 451 aaPredicted RBP13.64□□□□□ -0.23
CDH3-208ENST00000569036 PIH1D3Q9NQM4 214 aaKnown RBP13.64□□□□□ -0.23
CDH3-208ENST00000569036 MICAL3Q7RTP6 2002 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 TCTN1Q2MV58 587 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 EPC2Q52LR7 807 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 FAM47CQ5HY64 1035 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 FAM83BQ5T0W9 1011 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 TMEM63BQ5T3F8 832 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 CNKSR3Q6P9H4 555 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 FRMD5Q7Z6J6 570 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 CERS3Q8IU89 383 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 ANKRD35Q8N283 1001 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms