RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 RGS22Q8NE09 1264 aa25.47■■□□□ 1.67
CLN3-234ENST00000568472 HOMER2Q9NSB8 354 aa25.47■■□□□ 1.67
CLN3-234ENST00000568472 SEC63Q9UGP8 760 aaKnown RBP25.47■■□□□ 1.67
CLN3-234ENST00000568472 HPS5Q9UPZ3 1129 aa25.47■■□□□ 1.67
CLN3-234ENST00000568472 RAB11FIP4Q86YS3 637 aa25.46■■□□□ 1.67
CLN3-234ENST00000568472 PIGSQ96S52 555 aa25.46■■□□□ 1.67
CLN3-234ENST00000568472 MRPL11Q9Y3B7 192 aaKnown RBP25.46■■□□□ 1.67
CLN3-234ENST00000568472 COL11A1P12107 1806 aaPredicted RBP25.46■■□□□ 1.67
CLN3-234ENST00000568472 PLEKHA8P1O95397 391 aa25.45■■□□□ 1.66
CLN3-234ENST00000568472 SLC35G1Q2M3R5 365 aa25.45■■□□□ 1.66
CLN3-234ENST00000568472 HOMER1Q86YM7 354 aa25.45■■□□□ 1.66
CLN3-234ENST00000568472 ARMC5Q96C12 935 aa25.45■■□□□ 1.66
CLN3-234ENST00000568472 DNAJC25-GNG10A0A024R161 153 aa25.44■■□□□ 1.66
CLN3-234ENST00000568472 MCF2L2Q86YR7 1114 aa25.44■■□□□ 1.66
CLN3-234ENST00000568472 TBC1D32Q96NH3 1257 aa25.44■■□□□ 1.66
CLN3-234ENST00000568472 FAM217BQ9NTX9 383 aaPredicted RBP25.44■■□□□ 1.66
CLN3-234ENST00000568472 PCDHA1Q9Y5I3 950 aa25.44■■□□□ 1.66
CLN3-234ENST00000568472 ZSWIM8A7E2V4 1837 aa25.44■■□□□ 1.66
CLN3-234ENST00000568472 COBLO75128 1261 aa25.43■■□□□ 1.66
CLN3-234ENST00000568472 UBXN2AP68543 259 aa25.43■■□□□ 1.66
CLN3-234ENST00000568472 USH1GQ495M9 461 aa25.43■■□□□ 1.66
CLN3-234ENST00000568472 MUM1L1Q5H9M0 696 aa25.43■■□□□ 1.66
CLN3-234ENST00000568472 OLFML2BQ68BL8 750 aa25.43■■□□□ 1.66
CLN3-234ENST00000568472 SAMD3Q8N6K7 520 aa25.43■■□□□ 1.66
CLN3-234ENST00000568472 CLEC4DQ8WXI8 215 aa25.43■■□□□ 1.66
CLN3-234ENST00000568472 KIF2CQ99661 725 aa25.43■■□□□ 1.66
CLN3-234ENST00000568472 A1CFQ9NQ94 594 aaKnown RBP25.43■■□□□ 1.66
CLN3-234ENST00000568472 RBM27Q9P2N5 1060 aaKnown RBP25.43■■□□□ 1.66
CLN3-234ENST00000568472 HMGCRP04035 888 aa25.42■■□□□ 1.66
CLN3-234ENST00000568472 CDC27P30260 824 aa25.42■■□□□ 1.66
CLN3-234ENST00000568472 ADD1P35611 737 aaKnown RBP25.42■■□□□ 1.66
CLN3-234ENST00000568472 AK2P54819 239 aa25.42■■□□□ 1.66
CLN3-234ENST00000568472 RABEP1Q15276 862 aa25.42■■□□□ 1.66
CLN3-234ENST00000568472 ZNF792Q3KQV3 632 aa25.42■■□□□ 1.66
CLN3-234ENST00000568472 ZNF467Q7Z7K2 595 aaPredicted RBP25.42■■□□□ 1.66
CLN3-234ENST00000568472 MSL3Q8N5Y2 521 aaKnown RBP25.42■■□□□ 1.66
CLN3-234ENST00000568472 CYP39A1Q9NYL5 469 aa25.42■■□□□ 1.66
CLN3-234ENST00000568472 BIN2Q9UBW5 565 aaPredicted RBP25.42■■□□□ 1.66
CLN3-234ENST00000568472 ZNF236Q9UL36 1845 aa25.42■■□□□ 1.66
CLN3-234ENST00000568472 POTEB2H3BUK9 544 aa25.41■■□□□ 1.66
CLN3-234ENST00000568472 FUT2Q10981 343 aa25.41■■□□□ 1.66
CLN3-234ENST00000568472 MFSD14CQ5VZR4 134 aa25.41■■□□□ 1.66
CLN3-234ENST00000568472 CPLX2Q6PUV4 134 aaKnown RBP25.41■■□□□ 1.66
CLN3-234ENST00000568472 CMTR1Q8N1G2 835 aaKnown RBP25.41■■□□□ 1.66
CLN3-234ENST00000568472 CCDC82Q8N4S0 544 aa25.41■■□□□ 1.66
CLN3-234ENST00000568472 ABHD8Q96I13 439 aa25.41■■□□□ 1.66
CLN3-234ENST00000568472 MAP3K20Q9NYL2 800 aaKnown RBP25.41■■□□□ 1.66
CLN3-234ENST00000568472 NFIBO00712 420 aa25.4■■□□□ 1.66
CLN3-234ENST00000568472 PGK2P07205 417 aa25.4■■□□□ 1.66
CLN3-234ENST00000568472 ELNP15502 786 aa25.4■■□□□ 1.66
CLN3-234ENST00000568472 NSMFQ6X4W1 530 aa25.4■■□□□ 1.66
CLN3-234ENST00000568472 NPLOC4Q8TAT6 608 aa25.4■■□□□ 1.66
CLN3-234ENST00000568472 SH3TC2Q8TF17 1288 aa25.4■■□□□ 1.66
CLN3-234ENST00000568472 MAML3Q96JK9 1138 aa25.4■■□□□ 1.66
CLN3-234ENST00000568472 PPP1R11O60927 126 aaPredicted RBP25.39■■□□□ 1.66
CLN3-234ENST00000568472 IFNAR1P17181 557 aa25.39■■□□□ 1.66
CLN3-234ENST00000568472 RNF207Q6ZRF8 634 aa25.39■■□□□ 1.66
CLN3-234ENST00000568472 FAM133AQ8N9E0 248 aa25.39■■□□□ 1.66
CLN3-234ENST00000568472 TRIB2Q92519 343 aa25.39■■□□□ 1.66
CLN3-234ENST00000568472 ZNF333Q96JL9 665 aa25.39■■□□□ 1.66
CLN3-234ENST00000568472 SLKQ9H2G2 1235 aaPredicted RBP25.39■■□□□ 1.66
CLN3-234ENST00000568472 TPCN1Q9ULQ1 816 aa25.39■■□□□ 1.66
CLN3-234ENST00000568472 V9GY48 417 aaPredicted RBP25.39■■□□□ 1.66
CLN3-234ENST00000568472 CNTNAP5Q8WYK1 1306 aa25.38■■□□□ 1.65
CLN3-234ENST00000568472 LOC102724159A0A0B4J2E5 919 aa25.38■■□□□ 1.65
CLN3-234ENST00000568472 hCG_1984214I3L0E3 225 aa25.38■■□□□ 1.65
CLN3-234ENST00000568472 CPLX1O14810 134 aa25.38■■□□□ 1.65
CLN3-234ENST00000568472 PFKFB2O60825 505 aa25.38■■□□□ 1.65
CLN3-234ENST00000568472 CCT2P78371 535 aaKnown RBP25.38■■□□□ 1.65
CLN3-234ENST00000568472 AKAP17AQ02040 695 aaKnown RBP25.38■■□□□ 1.65
CLN3-234ENST00000568472 BAATQ14032 418 aaPredicted RBP25.38■■□□□ 1.65
CLN3-234ENST00000568472 PWP2Q15269 919 aaKnown RBP25.38■■□□□ 1.65
CLN3-234ENST00000568472 TEX2Q8IWB9 1127 aa25.38■■□□□ 1.65
CLN3-234ENST00000568472 ZNF713Q8N859 430 aaPredicted RBP25.38■■□□□ 1.65
CLN3-234ENST00000568472 PIBF1Q8WXW3 757 aa25.38■■□□□ 1.65
CLN3-234ENST00000568472 ADD3Q9UEY8 706 aaKnown RBP25.38■■□□□ 1.65
CLN3-234ENST00000568472 PTPDC1A2A3K4 754 aa25.37■■□□□ 1.65
CLN3-234ENST00000568472 CDKL5O76039 1030 aa25.37■■□□□ 1.65
CLN3-234ENST00000568472 IGHA2P01877 340 aa25.37■■□□□ 1.65
CLN3-234ENST00000568472 INHAP05111 366 aa25.37■■□□□ 1.65
CLN3-234ENST00000568472 GHRHRQ02643 423 aa25.37■■□□□ 1.65
CLN3-234ENST00000568472 CCL14Q16627 93 aa25.37■■□□□ 1.65
CLN3-234ENST00000568472 MAMDC4Q6UXC1 1216 aa25.37■■□□□ 1.65
CLN3-234ENST00000568472 LARP6Q9BRS8 491 aaKnown RBP25.37■■□□□ 1.65
CLN3-234ENST00000568472 RNF26Q9BY78 433 aaPredicted RBP25.37■■□□□ 1.65
CLN3-234ENST00000568472 NRBP1Q9UHY1 535 aa25.37■■□□□ 1.65
CLN3-234ENST00000568472 LIMCH1Q9UPQ0 1083 aa25.37■■□□□ 1.65
CLN3-234ENST00000568472 PLXNB2O15031 1838 aa25.37■■□□□ 1.65
CLN3-234ENST00000568472 DOCK3Q8IZD9 2030 aa25.36■■□□□ 1.65
CLN3-234ENST00000568472 PRPF3O43395 683 aaKnown RBP25.36■■□□□ 1.65
CLN3-234ENST00000568472 ST18O60284 1047 aa25.36■■□□□ 1.65
CLN3-234ENST00000568472 RPS6P62753 249 aaKnown RBP25.36■■□□□ 1.65
CLN3-234ENST00000568472 NTRK3Q16288 839 aa25.36■■□□□ 1.65
CLN3-234ENST00000568472 TRIM22Q8IYM9 498 aa25.36■■□□□ 1.65
CLN3-234ENST00000568472 TINF2Q9BSI4 451 aa25.36■■□□□ 1.65
CLN3-234ENST00000568472 NCOA5Q9HCD5 579 aaKnown RBP25.36■■□□□ 1.65
CLN3-234ENST00000568472 SYNGAP1Q96PV0 1343 aa25.36■■□□□ 1.65
CLN3-234ENST00000568472 ASB14A6NK59 587 aa25.35■■□□□ 1.65
CLN3-234ENST00000568472 B4DLN1 442 aa25.35■■□□□ 1.65
CLN3-234ENST00000568472 TAL1P17542 331 aaPredicted RBP25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms