RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 CYP2C19P33261 490 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 C8orf34Q49A92 452 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 RAB11FIP4Q86YS3 637 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 FAM133AQ8N9E0 248 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 NUP133Q8WUM0 1156 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 RNF208Q9H0X6 261 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 RIOX1Q9H6W3 641 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 BRPF3Q9ULD4 1205 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 SOWAHBA6NEL2 793 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 CCDC69A6NI79 296 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 PLEKHA8P1O95397 391 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 GJA8P48165 433 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 CNTN2Q02246 1040 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 APOA5Q6Q788 366 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 MAMDC4Q6UXC1 1216 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 NFXL1Q6ZNB6 911 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 ANKRD35Q8N283 1001 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 TMTC2Q8N394 836 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 FBXL16Q8N461 479 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 U2AF1L4Q8WU68 220 aaKnown RBP11.41□□□□□ -0.58
CLK3-220ENST00000567992 IL17RAQ96F46 866 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 PIGSQ96S52 555 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 TINF2Q9BSI4 451 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 TMEM106CQ9BVX2 250 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 AGXT2Q9BYV1 514 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 CRISPLD2Q9H0B8 497 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 ZSWIM6Q9HCJ5 1215 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 SLC5A4Q9NY91 659 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 CYP39A1Q9NYL5 469 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 SLC12A7Q9Y666 1083 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 NID2Q14112 1375 aa11.41□□□□□ -0.58
CLK3-220ENST00000567992 PFASO15067 1338 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 OPLAHO14841 1288 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 ZBTB5O15062 677 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 SGPL1O95470 568 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 CASTP20810 708 aaKnown RBP11.4□□□□□ -0.58
CLK3-220ENST00000567992 USH1GQ495M9 461 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 MFSD14CQ5VZR4 134 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 LHX8Q68G74 356 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 BLOC1S2Q6QNY1 142 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 SLC30A10Q6XR72 485 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 Q6ZUG5 572 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 TMTC3Q6ZXV5 915 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 UBE2Q1Q7Z7E8 422 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 ZNF467Q7Z7K2 595 aaPredicted RBP11.4□□□□□ -0.58
CLK3-220ENST00000567992 MICU3Q86XE3 530 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 CCDC144CPQ8IYA2 1237 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 SRBD1Q8N5C6 995 aaKnown RBP11.4□□□□□ -0.58
CLK3-220ENST00000567992 CTCFLQ8NI51 663 aaPredicted RBP11.4□□□□□ -0.58
CLK3-220ENST00000567992 DDX11Q96FC9 970 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 DEFB118Q96PH6 123 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 PURBQ96QR8 312 aaKnown RBP11.4□□□□□ -0.58
CLK3-220ENST00000567992 SPZ1Q9BXG8 430 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 TM6SF1Q9BZW5 370 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 VAT1LQ9HCJ6 419 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 HMX1Q9NP08 348 aaPredicted RBP11.4□□□□□ -0.58
CLK3-220ENST00000567992 PNMA2Q9UL42 364 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 DNAH12Q6ZR08 3092 aa11.4□□□□□ -0.58
CLK3-220ENST00000567992 ABCB11O95342 1321 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 SYNGAP1Q96PV0 1343 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 KLF18A0A0U1RQI7 1052 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 POTEB2H3BUK9 544 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 DHX16O60231 1041 aaKnown RBP11.39□□□□□ -0.59
CLK3-220ENST00000567992 SNAI1O95863 264 aaPredicted RBP11.39□□□□□ -0.59
CLK3-220ENST00000567992 ZNF865P0CJ78 1059 aaPredicted RBP11.39□□□□□ -0.59
CLK3-220ENST00000567992 CALM1P0DP23 149 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 CALM2P0DP24 149 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 CALM3P0DP25 149 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 SMARCA1P28370 1054 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 KIF5BP33176 963 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 MNX1P50219 401 aaPredicted RBP11.39□□□□□ -0.59
CLK3-220ENST00000567992 GHRHRQ02643 423 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 FUT2Q10981 343 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 BAATQ14032 418 aaPredicted RBP11.39□□□□□ -0.59
CLK3-220ENST00000567992 PRAMEF19Q5SWL8 479 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 NSMFQ6X4W1 530 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 RUFY3Q7L099 469 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 HOMER1Q86YM7 354 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 CMTR1Q8N1G2 835 aaKnown RBP11.39□□□□□ -0.59
CLK3-220ENST00000567992 MSL3Q8N5Y2 521 aaKnown RBP11.39□□□□□ -0.59
CLK3-220ENST00000567992 FANCBQ8NB91 859 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 KATNBL1Q9H079 304 aa11.39□□□□□ -0.59
CLK3-220ENST00000567992 FAM217BQ9NTX9 383 aaPredicted RBP11.39□□□□□ -0.59
CLK3-220ENST00000567992 DDX49Q9Y6V7 483 aaKnown RBP11.39□□□□□ -0.59
CLK3-220ENST00000567992 CNTNAP5Q8WYK1 1306 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 ZBTB43O43298 467 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 PSMA5P28066 241 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 RCAN1P53805 252 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 EVCP57679 992 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 ANAPC15P60006 121 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 RPS6P62753 249 aaKnown RBP11.38□□□□□ -0.59
CLK3-220ENST00000567992 APOBRQ0VD83 1088 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 TOB2Q14106 344 aaPredicted RBP11.38□□□□□ -0.59
CLK3-220ENST00000567992 RNF207Q6ZRF8 634 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 ARMCX2Q7L311 632 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 FBXO11Q86XK2 927 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 RGS22Q8NE09 1264 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 MORC4Q8TE76 937 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 TBC1D5Q92609 795 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 BRF1Q92994 677 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms