RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 ACLYP53396 1101 aa12.73□□□□□ -0.37
VPS39-208ENST00000564994 SH3RF1Q7Z6J0 888 aa12.73□□□□□ -0.37
VPS39-208ENST00000564994 ZSWIM5Q9P217 1185 aa12.73□□□□□ -0.37
VPS39-208ENST00000564994 COL6A3P12111 3177 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.72□□□□□ -0.37
VPS39-208ENST00000564994 NFIBO00712 420 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 CTAGE5O15320 804 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 GOLGA8HP0CJ92 632 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 PTGS1P23219 599 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 TLE2Q04725 743 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 KCNA10Q16322 511 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 IMMTQ16891 758 aaKnown RBP12.72□□□□□ -0.37
VPS39-208ENST00000564994 LRIT3Q3SXY7 679 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 NSMFQ6X4W1 530 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 DGKHQ86XP1 1220 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 CLEC4DQ8WXI8 215 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 ANKS1AQ92625 1134 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 TSEN34Q9BSV6 310 aaKnown RBP12.72□□□□□ -0.37
VPS39-208ENST00000564994 UPF3AQ9H1J1 476 aaKnown RBP12.72□□□□□ -0.37
VPS39-208ENST00000564994 CPVLQ9H3G5 476 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 PDLIM7Q9NR12 457 aa12.72□□□□□ -0.37
VPS39-208ENST00000564994 TRIM43BA6NCK2 446 aa12.71□□□□□ -0.37
VPS39-208ENST00000564994 ASB14A6NK59 587 aa12.71□□□□□ -0.37
VPS39-208ENST00000564994 C6orf222P0C671 652 aaPredicted RBP12.71□□□□□ -0.37
VPS39-208ENST00000564994 CST5P28325 142 aaPredicted RBP12.71□□□□□ -0.37
VPS39-208ENST00000564994 NT5C2P49902 561 aa12.71□□□□□ -0.37
VPS39-208ENST00000564994 GJA9P57773 515 aa12.71□□□□□ -0.37
VPS39-208ENST00000564994 BAATQ14032 418 aaPredicted RBP12.71□□□□□ -0.37
VPS39-208ENST00000564994 TMEM63BQ5T3F8 832 aa12.71□□□□□ -0.37
VPS39-208ENST00000564994 IQCA1Q86XH1 822 aa12.71□□□□□ -0.37
VPS39-208ENST00000564994 ENAHQ8N8S7 591 aaPredicted RBP12.71□□□□□ -0.37
VPS39-208ENST00000564994 PNMA1Q8ND90 353 aa12.71□□□□□ -0.37
VPS39-208ENST00000564994 TRIM43Q96BQ3 446 aaPredicted RBP12.71□□□□□ -0.37
VPS39-208ENST00000564994 ZSCAN10Q96SZ4 725 aaPredicted RBP12.71□□□□□ -0.37
VPS39-208ENST00000564994 LBHD1Q9BQE6 289 aaPredicted RBP12.71□□□□□ -0.37
VPS39-208ENST00000564994 UBA5Q9GZZ9 404 aa12.71□□□□□ -0.37
VPS39-208ENST00000564994 PRDM5Q9NQX1 630 aaPredicted RBP12.71□□□□□ -0.37
VPS39-208ENST00000564994 CTNNA3Q9UI47 895 aa12.71□□□□□ -0.37
VPS39-208ENST00000564994 TNKSO95271 1327 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 RAD50Q92878 1312 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 MOXD2PA6NHM9 499 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 ITGB8P26012 769 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 CHMLP26374 656 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 PTH1RQ03431 593 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 TAPT1Q6NXT6 567 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 SLC30A10Q6XR72 485 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 EEPD1Q7L9B9 569 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 FBXO16Q8IX29 292 aaPredicted RBP12.7□□□□□ -0.38
VPS39-208ENST00000564994 MORC4Q8TE76 937 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 BADQ92934 168 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 STARD7Q9NQZ5 370 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 PDGFCQ9NRA1 345 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 PRKAG2Q9UGJ0 569 aa12.7□□□□□ -0.38
VPS39-208ENST00000564994 GNEQ9Y223 722 aaKnown RBP12.7□□□□□ -0.38
VPS39-208ENST00000564994 WDR19Q8NEZ3 1342 aa12.69□□□□□ -0.38
VPS39-208ENST00000564994 BAZ2BQ9UIF8 2168 aaKnown RBP12.69□□□□□ -0.38
VPS39-208ENST00000564994 PQBP1O60828 265 aaKnown RBP12.69□□□□□ -0.38
VPS39-208ENST00000564994 ASGR1P07306 291 aa12.69□□□□□ -0.38
VPS39-208ENST00000564994 SMPD1P17405 629 aa12.69□□□□□ -0.38
VPS39-208ENST00000564994 NKX3-2P78367 333 aa12.69□□□□□ -0.38
VPS39-208ENST00000564994 BEX3Q00994 111 aa12.69□□□□□ -0.38
VPS39-208ENST00000564994 TNFAIP2Q03169 654 aa12.69□□□□□ -0.38
VPS39-208ENST00000564994 CCDC178Q5BJE1 867 aa12.69□□□□□ -0.38
VPS39-208ENST00000564994 GPATCH4Q5T3I0 446 aaKnown RBP12.69□□□□□ -0.38
VPS39-208ENST00000564994 CYB5R4Q7L1T6 521 aa12.69□□□□□ -0.38
VPS39-208ENST00000564994 KRT23Q9C075 422 aa12.69□□□□□ -0.38
VPS39-208ENST00000564994 KAT14Q9H8E8 782 aa12.69□□□□□ -0.38
VPS39-208ENST00000564994 TAF6LQ9Y6J9 622 aa12.69□□□□□ -0.38
VPS39-208ENST00000564994 PTPDC1A2A3K4 754 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 CYP21A2P08686 494 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 CLTBP09497 229 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 CALML3P27482 149 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 ALDH5A1P51649 535 aaPredicted RBP12.68□□□□□ -0.38
VPS39-208ENST00000564994 RPS6P62753 249 aaKnown RBP12.68□□□□□ -0.38
VPS39-208ENST00000564994 FAAP100Q0VG06 881 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 SEC23AQ15436 765 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 GNASQ5JWF2 1037 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 ANKRD33Q7Z3H0 272 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 ADGRF4Q8IZF3 695 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 PCSK9Q8NBP7 692 aaKnown RBP12.68□□□□□ -0.38
VPS39-208ENST00000564994 NUP133Q8WUM0 1156 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 GLT1D1Q96MS3 346 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 CNNM2Q9H8M5 875 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 SPC25Q9HBM1 224 aa12.68□□□□□ -0.38
VPS39-208ENST00000564994 ELP1O95163 1332 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 CDH23Q9H251 3354 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 KIAA0355O15063 1070 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 SGSM2O43147 1006 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 CDK7P50613 346 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 SHHQ15465 462 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 CDC37Q16543 378 aaPredicted RBP12.67□□□□□ -0.38
VPS39-208ENST00000564994 USH1GQ495M9 461 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 ASPRV1Q53RT3 343 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 C9orf50Q5SZB4 431 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 GPR153Q6NV75 609 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 RNF207Q6ZRF8 634 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 NOL8Q76FK4 1167 aaKnown RBP12.67□□□□□ -0.38
VPS39-208ENST00000564994 Q7L0L9 218 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 TLK2Q86UE8 772 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 RUFY2Q8WXA3 655 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms