RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 CWC22Q9HCG8 908 aaKnown RBP23.78■■□□□ 1.4
CLN3-212ENST00000564574 FOXD4L1Q9NU39 408 aa23.78■■□□□ 1.4
CLN3-212ENST00000564574 SAGE1Q9NXZ1 904 aa23.78■■□□□ 1.4
CLN3-212ENST00000564574 MRPL11Q9Y3B7 192 aaKnown RBP23.78■■□□□ 1.4
CLN3-212ENST00000564574 STXBP3O00186 592 aa23.77■■□□□ 1.4
CLN3-212ENST00000564574 DTNBO60941 627 aa23.77■■□□□ 1.4
CLN3-212ENST00000564574 NAPAP54920 295 aa23.77■■□□□ 1.4
CLN3-212ENST00000564574 USH1GQ495M9 461 aa23.77■■□□□ 1.4
CLN3-212ENST00000564574 SHCBP1Q8NEM2 672 aa23.77■■□□□ 1.4
CLN3-212ENST00000564574 COA7Q96BR5 231 aa23.77■■□□□ 1.4
CLN3-212ENST00000564574 MAF1Q9H063 256 aa23.77■■□□□ 1.4
CLN3-212ENST00000564574 RNF186Q9NXI6 227 aa23.77■■□□□ 1.4
CLN3-212ENST00000564574 ALAS1P13196 640 aa23.76■■□□□ 1.39
CLN3-212ENST00000564574 PDCP20941 246 aa23.76■■□□□ 1.39
CLN3-212ENST00000564574 TRIM29Q14134 588 aa23.76■■□□□ 1.39
CLN3-212ENST00000564574 TEX2Q8IWB9 1127 aa23.76■■□□□ 1.39
CLN3-212ENST00000564574 TNS4Q8IZW8 715 aa23.76■■□□□ 1.39
CLN3-212ENST00000564574 CHST13Q8NET6 341 aa23.76■■□□□ 1.39
CLN3-212ENST00000564574 MOV10L1Q9BXT6 1211 aaKnown RBP23.76■■□□□ 1.39
CLN3-212ENST00000564574 FBXO40Q9UH90 709 aa23.76■■□□□ 1.39
CLN3-212ENST00000564574 CPA4Q9UI42 421 aa23.76■■□□□ 1.39
CLN3-212ENST00000564574 ESYT2A0FGR8 921 aa23.75■■□□□ 1.39
CLN3-212ENST00000564574 PDIA4P13667 645 aaKnown RBP23.75■■□□□ 1.39
CLN3-212ENST00000564574 Q3C1V9 767 aa23.75■■□□□ 1.39
CLN3-212ENST00000564574 SPRYD3Q8NCJ5 442 aa23.75■■□□□ 1.39
CLN3-212ENST00000564574 C8orf76Q96K31 380 aa23.75■■□□□ 1.39
CLN3-212ENST00000564574 AIFM3Q96NN9 605 aa23.75■■□□□ 1.39
CLN3-212ENST00000564574 IPO9Q96P70 1041 aaKnown RBP23.75■■□□□ 1.39
CLN3-212ENST00000564574 TRERF1Q96PN7 1200 aa23.75■■□□□ 1.39
CLN3-212ENST00000564574 GLT8D2Q9H1C3 349 aa23.75■■□□□ 1.39
CLN3-212ENST00000564574 VPS54Q9P1Q0 977 aa23.75■■□□□ 1.39
CLN3-212ENST00000564574 TRPA1O75762 1119 aa23.74■■□□□ 1.39
CLN3-212ENST00000564574 SLC4A3P48751 1232 aa23.74■■□□□ 1.39
CLN3-212ENST00000564574 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.74■■□□□ 1.39
CLN3-212ENST00000564574 SAMD3Q8N6K7 520 aa23.74■■□□□ 1.39
CLN3-212ENST00000564574 MROH8Q9H579 483 aa23.74■■□□□ 1.39
CLN3-212ENST00000564574 ACAD9Q9H845 621 aa23.74■■□□□ 1.39
CLN3-212ENST00000564574 RNF146Q9NTX7 359 aa23.74■■□□□ 1.39
CLN3-212ENST00000564574 LARP1BQ659C4 914 aaKnown RBP23.73■■□□□ 1.39
CLN3-212ENST00000564574 GALNT17Q6IS24 598 aa23.73■■□□□ 1.39
CLN3-212ENST00000564574 TYW1BQ6NUM6 668 aa23.73■■□□□ 1.39
CLN3-212ENST00000564574 MCF2L2Q86YR7 1114 aa23.73■■□□□ 1.39
CLN3-212ENST00000564574 BEGAINQ9BUH8 593 aa23.73■■□□□ 1.39
CLN3-212ENST00000564574 ZMYND12Q9H0C1 365 aa23.73■■□□□ 1.39
CLN3-212ENST00000564574 C6orf50Q9HD87 102 aa23.73■■□□□ 1.39
CLN3-212ENST00000564574 RIPK3Q9Y572 518 aa23.73■■□□□ 1.39
CLN3-212ENST00000564574 MGAMO43451 1857 aa23.73■■□□□ 1.39
CLN3-212ENST00000564574 SMCO2A6NFE2 343 aa23.72■■□□□ 1.39
CLN3-212ENST00000564574 PEX10O60683 326 aa23.72■■□□□ 1.39
CLN3-212ENST00000564574 ERCC3P19447 782 aa23.72■■□□□ 1.39
CLN3-212ENST00000564574 CALML3P27482 149 aa23.72■■□□□ 1.39
CLN3-212ENST00000564574 GNA11P29992 359 aa23.72■■□□□ 1.39
CLN3-212ENST00000564574 NLRP5P59047 1200 aa23.72■■□□□ 1.39
CLN3-212ENST00000564574 NCAPG2Q86XI2 1143 aa23.72■■□□□ 1.39
CLN3-212ENST00000564574 FBXO18Q8NFZ0 1043 aa23.72■■□□□ 1.39
CLN3-212ENST00000564574 PHF20Q9BVI0 1012 aa23.72■■□□□ 1.39
CLN3-212ENST00000564574 MAP3K20Q9NYL2 800 aaKnown RBP23.72■■□□□ 1.39
CLN3-212ENST00000564574 PLXNB2O15031 1838 aa23.72■■□□□ 1.39
CLN3-212ENST00000564574 FOXN1O15353 648 aa23.71■■□□□ 1.39
CLN3-212ENST00000564574 TBC1D8O95759 1140 aa23.71■■□□□ 1.39
CLN3-212ENST00000564574 MAPK4P31152 587 aa23.71■■□□□ 1.39
CLN3-212ENST00000564574 ADCY7P51828 1080 aa23.71■■□□□ 1.39
CLN3-212ENST00000564574 GHRHRQ02643 423 aa23.71■■□□□ 1.39
CLN3-212ENST00000564574 KRT40Q6A162 431 aa23.71■■□□□ 1.39
CLN3-212ENST00000564574 CCAR1Q8IX12 1150 aaKnown RBP23.71■■□□□ 1.39
CLN3-212ENST00000564574 BICD2Q8TD16 824 aa23.71■■□□□ 1.39
CLN3-212ENST00000564574 CLEC4DQ8WXI8 215 aa23.71■■□□□ 1.39
CLN3-212ENST00000564574 CUL5Q93034 780 aa23.71■■□□□ 1.39
CLN3-212ENST00000564574 RIC8AQ9NPQ8 531 aa23.71■■□□□ 1.39
CLN3-212ENST00000564574 HOMER2Q9NSB8 354 aa23.71■■□□□ 1.39
CLN3-212ENST00000564574 ZNFX1Q9P2E3 1918 aaKnown RBP23.71■■□□□ 1.39
CLN3-212ENST00000564574 TAL1P17542 331 aaPredicted RBP23.7■■□□□ 1.38
CLN3-212ENST00000564574 MRPL12P52815 198 aaKnown RBP23.7■■□□□ 1.38
CLN3-212ENST00000564574 NOM1Q5C9Z4 860 aaKnown RBP23.7■■□□□ 1.38
CLN3-212ENST00000564574 MUM1L1Q5H9M0 696 aa23.7■■□□□ 1.38
CLN3-212ENST00000564574 DAGLBQ8NCG7 672 aa23.7■■□□□ 1.38
CLN3-212ENST00000564574 SHISA4Q96DD7 197 aa23.7■■□□□ 1.38
CLN3-212ENST00000564574 PSTPIP2Q9H939 334 aa23.7■■□□□ 1.38
CLN3-212ENST00000564574 BRMS1Q9HCU9 246 aa23.7■■□□□ 1.38
CLN3-212ENST00000564574 H3BQV1 296 aa23.69■■□□□ 1.38
CLN3-212ENST00000564574 OPLAHO14841 1288 aa23.69■■□□□ 1.38
CLN3-212ENST00000564574 MMP1P03956 469 aa23.69■■□□□ 1.38
CLN3-212ENST00000564574 SAFBQ15424 915 aaKnown RBP eCLIP23.69■■□□□ 1.38
CLN3-212ENST00000564574 PORCNQ9H237 461 aa23.69■■□□□ 1.38
CLN3-212ENST00000564574 R3HDMLQ9H3Y0 253 aa23.69■■□□□ 1.38
CLN3-212ENST00000564574 WBP1LQ9NX94 342 aa23.69■■□□□ 1.38
CLN3-212ENST00000564574 PCDHA4Q9UN74 947 aa23.69■■□□□ 1.38
CLN3-212ENST00000564574 KCNJ14Q9UNX9 436 aa23.69■■□□□ 1.38
CLN3-212ENST00000564574 ZNF236Q9UL36 1845 aa23.68■■□□□ 1.38
CLN3-212ENST00000564574 PFASO15067 1338 aa23.68■■□□□ 1.38
CLN3-212ENST00000564574 PIK3CDO00329 1044 aa23.68■■□□□ 1.38
CLN3-212ENST00000564574 NFIBO00712 420 aa23.68■■□□□ 1.38
CLN3-212ENST00000564574 SYT1P21579 422 aa23.68■■□□□ 1.38
CLN3-212ENST00000564574 FOSBP53539 338 aa23.68■■□□□ 1.38
CLN3-212ENST00000564574 MCTP2Q6DN12 878 aa23.68■■□□□ 1.38
CLN3-212ENST00000564574 EFCC1Q9HA90 598 aa23.68■■□□□ 1.38
CLN3-212ENST00000564574 GJB4Q9NTQ9 266 aa23.68■■□□□ 1.38
CLN3-212ENST00000564574 GCOM1H8Y6P7 765 aaPredicted RBP23.67■■□□□ 1.38
CLN3-212ENST00000564574 STRNO43815 780 aa23.67■■□□□ 1.38
CLN3-212ENST00000564574 POLR2MP0CAP2 368 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms