RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 KRTAP9-7A8MTY7 169 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 FARP2O94887 1054 aaPredicted RBP4.46□□□□□ -1.7
SPG11-225ENST00000561391 PAPLNO95428 1278 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 CTSHP09668 335 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 PCDH1Q08174 1060 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 MRPL58Q14197 206 aaKnown RBP4.46□□□□□ -1.7
SPG11-225ENST00000561391 NFIXQ14938 502 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 PLCL1Q15111 1095 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 TAF1CQ15572 869 aaPredicted RBP4.46□□□□□ -1.7
SPG11-225ENST00000561391 USP50Q70EL3 339 aaPredicted RBP4.46□□□□□ -1.7
SPG11-225ENST00000561391 VN1R5Q7Z5H4 357 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 NME9Q86XW9 330 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 KSR1Q8IVT5 923 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 YIPF2Q9BWQ6 316 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 USP26Q9BXU7 913 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 ADAM19Q9H013 955 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 CLEC4MQ9H2X3 399 aaPredicted RBP4.46□□□□□ -1.7
SPG11-225ENST00000561391 ZNF576Q9H609 170 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 LRRC4CQ9HCJ2 640 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 PAK6Q9NQU5 681 aaPredicted RBP4.46□□□□□ -1.7
SPG11-225ENST00000561391 GPN3Q9UHW5 284 aaPredicted RBP4.46□□□□□ -1.7
SPG11-225ENST00000561391 SOX13Q9UN79 622 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 TTC21AQ8NDW8 1320 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 PCDH11XQ9BZA7 1347 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 PCDH11YQ9BZA8 1340 aa4.46□□□□□ -1.7
SPG11-225ENST00000561391 USP42Q9H9J4 1324 aaKnown RBP4.46□□□□□ -1.7
SPG11-225ENST00000561391 USP31Q70CQ4 1352 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 WTIPA6NIX2 430 aaPredicted RBP4.45□□□□□ -1.7
SPG11-225ENST00000561391 FZD9O00144 591 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 XRCC5P13010 732 aaKnown RBP4.45□□□□□ -1.7
SPG11-225ENST00000561391 FBLN1P23142 703 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 ITPKAP23677 461 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 EIF6P56537 245 aaKnown RBP4.45□□□□□ -1.7
SPG11-225ENST00000561391 GSTM4Q03013 218 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 CCDC85BQ15834 202 aaPredicted RBP4.45□□□□□ -1.7
SPG11-225ENST00000561391 ZNF423Q2M1K9 1284 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 HGSNATQ68CP4 663 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 USP48Q86UV5 1035 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 C3orf58Q8NDZ4 430 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 FBLIM1Q8WUP2 373 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 CRELD1Q96HD1 420 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 SLC38A3Q99624 504 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 UNC80Q8N2C7 3258 aa4.45□□□□□ -1.7
SPG11-225ENST00000561391 AKAP11Q9UKA4 1901 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 MAP2P11137 1827 aaKnown RBP4.44□□□□□ -1.7
SPG11-225ENST00000561391 FER1L6Q2WGJ9 1857 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 MEGF11A6BM72 1044 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 FAM170BA6NMN3 283 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 F6X3S4 739 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 RECKO95980 971 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 ESRRAP11474 423 aaPredicted RBP4.44□□□□□ -1.7
SPG11-225ENST00000561391 PDE6BP35913 854 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 CRKLP46109 303 aaKnown RBP4.44□□□□□ -1.7
SPG11-225ENST00000561391 AMPHP49418 695 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 C19orf57Q0VDD7 668 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 FAAP100Q0VG06 881 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 MAP3K12Q12852 859 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 MAP3K11Q16584 847 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 DUSP27Q5VZP5 1158 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 OLFM4Q6UX06 510 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 CDC37L1Q7L3B6 337 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 ZAR1Q86SH2 424 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 SHISA5Q8N114 240 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 C2orf69Q8N8R5 385 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 JDP2Q8WYK2 163 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 MPHOSPH9Q99550 1183 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 ZFYVE1Q9HBF4 777 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 MTMR10Q9NXD2 777 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 TRIM17Q9Y577 477 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 PAPPA2Q9BXP8 1791 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 ITGB4P16144 1822 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 CGNL1Q0VF96 1302 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 CNTNAP4Q9C0A0 1308 aa4.44□□□□□ -1.7
SPG11-225ENST00000561391 CARMIL3Q8ND23 1372 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 SCN11AQ9UI33 1791 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 FKTNO75072 461 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 VAMP1P23763 118 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 HOXC9P31274 260 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 IARSP41252 1262 aaKnown RBP4.43□□□□□ -1.7
SPG11-225ENST00000561391 PTPN12Q05209 780 aaKnown RBP4.43□□□□□ -1.7
SPG11-225ENST00000561391 PPP2R3AQ06190 1150 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 SLC4A8Q2Y0W8 1093 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 CCDC93Q567U6 631 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 LDLRAD1Q5T700 205 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 SOGA3Q5TF21 947 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 CDPF1Q6NVV7 123 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 SMG8Q8ND04 991 aaKnown RBP4.43□□□□□ -1.7
SPG11-225ENST00000561391 ZC3H12CQ9C0D7 883 aaKnown RBP4.43□□□□□ -1.7
SPG11-225ENST00000561391 CEP44Q9C0F1 390 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 PRO3102Q9H379 93 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 R3HDMLQ9H3Y0 253 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 ADARB2Q9NS39 739 aaKnown RBP4.43□□□□□ -1.7
SPG11-225ENST00000561391 TMEM39AQ9NV64 488 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 PRKAG2Q9UGJ0 569 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 STAP2Q9UGK3 403 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 SLC5A6Q9Y289 635 aa4.43□□□□□ -1.7
SPG11-225ENST00000561391 LTN1O94822 1766 aa4.42□□□□□ -1.7
SPG11-225ENST00000561391 RGPD2P0DJD1 1756 aa4.42□□□□□ -1.7
SPG11-225ENST00000561391 INSRP06213 1382 aa4.42□□□□□ -1.7
SPG11-225ENST00000561391 KTN1Q86UP2 1357 aaKnown RBP4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms