RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 RNF180Q86T96 592 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 ENAHQ8N8S7 591 aaPredicted RBP10.09□□□□□ -0.79
USP3-208ENST00000558285 CTCFLQ8NI51 663 aaPredicted RBP10.09□□□□□ -0.79
USP3-208ENST00000558285 ZKSCAN3Q9BRR0 538 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 RANBP17Q9H2T7 1088 aaKnown RBP10.09□□□□□ -0.79
USP3-208ENST00000558285 ABHD16BQ9H3Z7 469 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 C11orf49Q9H6J7 331 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 INCENPQ9NQS7 918 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 HOMER2Q9NSB8 354 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 OGDHLQ9ULD0 1010 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 FAM184BQ9ULE4 1060 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 ABCB11O95342 1321 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 CCDC69A6NI79 296 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 E7EWF7 191 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 EPB41L2O43491 1005 aaKnown RBP10.08□□□□□ -0.8
USP3-208ENST00000558285 EVI5O60447 810 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 PEX10O60683 326 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 CYP21A2P08686 494 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 SNHG28P0DPA3 235 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 CYP2C19P33261 490 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 FGD1P98174 961 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 CCL14Q16627 93 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 ZNF792Q3KQV3 632 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 SAMD3Q8N6K7 520 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 METRNQ9UJH8 293 aa10.08□□□□□ -0.8
USP3-208ENST00000558285 MRPL11Q9Y3B7 192 aaKnown RBP10.08□□□□□ -0.8
USP3-208ENST00000558285 FRMPD2Q68DX3 1309 aaPredicted RBP10.08□□□□□ -0.8
USP3-208ENST00000558285 ZSWIM8A7E2V4 1837 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 LAMA4Q16363 1823 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 DNM1LO00429 736 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 COBLO75128 1261 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 DDAH1O94760 285 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 PGK2P07205 417 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 CYBAP13498 195 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 POTEEQ6S8J3 1075 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 MAMDC4Q6UXC1 1216 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 NSMFQ6X4W1 530 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 NPLOC4Q8TAT6 608 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 MAP3K14Q99558 947 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 PRKAG2Q9UGJ0 569 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 KIAA0100Q14667 2235 aaKnown RBP10.07□□□□□ -0.8
USP3-208ENST00000558285 PTPDC1A2A3K4 754 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 GTPBP6O43824 516 aaPredicted RBP10.07□□□□□ -0.8
USP3-208ENST00000558285 ZEB2O60315 1214 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 PSMA5P28066 241 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 PTH1RQ03431 593 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 BRDTQ58F21 947 aaPredicted RBP10.07□□□□□ -0.8
USP3-208ENST00000558285 RGS22Q8NE09 1264 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 AMNQ9BXJ7 453 aa10.07□□□□□ -0.8
USP3-208ENST00000558285 MAP3K20Q9NYL2 800 aaKnown RBP10.07□□□□□ -0.8
USP3-208ENST00000558285 SEC63Q9UGP8 760 aaKnown RBP10.07□□□□□ -0.8
USP3-208ENST00000558285 DNAJC25-GNG10A0A024R161 153 aa10.06□□□□□ -0.8
USP3-208ENST00000558285 CCND3P30281 292 aaPredicted RBP10.06□□□□□ -0.8
USP3-208ENST00000558285 SLC16A2P36021 539 aa10.06□□□□□ -0.8
USP3-208ENST00000558285 CDC37Q16543 378 aaPredicted RBP10.06□□□□□ -0.8
USP3-208ENST00000558285 RNF207Q6ZRF8 634 aa10.06□□□□□ -0.8
USP3-208ENST00000558285 FBXO11Q86XK2 927 aa10.06□□□□□ -0.8
USP3-208ENST00000558285 PCSK9Q8NBP7 692 aaKnown RBP10.06□□□□□ -0.8
USP3-208ENST00000558285 DNERQ8NFT8 737 aa10.06□□□□□ -0.8
USP3-208ENST00000558285 SHISA4Q96DD7 197 aa10.06□□□□□ -0.8
USP3-208ENST00000558285 PAWRQ96IZ0 340 aaKnown RBP10.06□□□□□ -0.8
USP3-208ENST00000558285 AGBL1Q96MI9 1066 aa10.06□□□□□ -0.8
USP3-208ENST00000558285 XPNPEP3Q9NQH7 507 aa10.06□□□□□ -0.8
USP3-208ENST00000558285 ZHX1Q9UKY1 873 aaPredicted RBP10.06□□□□□ -0.8
USP3-208ENST00000558285 SLC12A7Q9Y666 1083 aa10.06□□□□□ -0.8
USP3-208ENST00000558285 PLXNB2O15031 1838 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 KLRF2D3W0D1 207 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 SLC27A2O14975 620 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 PRC1O43663 620 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 C7P10643 843 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 SMARCA1P28370 1054 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 TRIM32Q13049 653 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 MMRN1Q13201 1228 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 CREB3L3Q68CJ9 461 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 NOL8Q76FK4 1167 aaKnown RBP10.05□□□□□ -0.8
USP3-208ENST00000558285 NUP133Q8WUM0 1156 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 SLC39A7Q92504 469 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 CHMP4CQ96CF2 233 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 SEZ6LQ9BYH1 1024 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 LSG1Q9H089 658 aaKnown RBP10.05□□□□□ -0.8
USP3-208ENST00000558285 AP5M1Q9H0R1 490 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 VTA1Q9NP79 307 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 A1CFQ9NQ94 594 aaKnown RBP10.05□□□□□ -0.8
USP3-208ENST00000558285 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.05□□□□□ -0.8
USP3-208ENST00000558285 RIPK3Q9Y572 518 aa10.05□□□□□ -0.8
USP3-208ENST00000558285 CCDC196A0A1B0GTZ2 297 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 LIFRP42702 1097 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 PDE4DQ08499 809 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 ACVR2BQ13705 512 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 GRM4Q14833 912 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 PPP2R5BQ15173 497 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 TTBK2Q6IQ55 1244 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 ARMCX2Q7L311 632 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 TEX2Q8IWB9 1127 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 ADGRF4Q8IZF3 695 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 FAM133AQ8N9E0 248 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 RRP36Q96EU6 259 aaKnown RBP10.04□□□□□ -0.8
USP3-208ENST00000558285 NEK1Q96PY6 1258 aa10.04□□□□□ -0.8
USP3-208ENST00000558285 TSEN34Q9BSV6 310 aaKnown RBP10.04□□□□□ -0.8
USP3-208ENST00000558285 CYP39A1Q9NYL5 469 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms