RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 TRAF1Q13077 416 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 ADCK5Q3MIX3 580 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 MUM1L1Q5H9M0 696 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 MAMDC4Q6UXC1 1216 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 SYNE3Q6ZMZ3 975 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 SHISA4Q96DD7 197 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 MAF1Q9H063 256 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 JMJD4Q9H9V9 463 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 VAT1LQ9HCJ6 419 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 SNX14Q9Y5W7 946 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 SLC12A7Q9Y666 1083 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 BAZ2BQ9UIF8 2168 aaKnown RBP14.52□□□□□ -0.08
SLIRP-209ENST00000557342 EXOSC10Q01780 885 aaKnown RBP14.52□□□□□ -0.09
SLIRP-209ENST00000557342 QRICH1Q2TAL8 776 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 USH1GQ495M9 461 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 BLOC1S2Q6QNY1 142 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 NSMFQ6X4W1 530 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 SGMS1Q86VZ5 419 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 FBXO11Q86XK2 927 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 FAM133AQ8N9E0 248 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 ANKLE1Q8NAG6 615 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 JAKMIP1Q96N16 626 aaKnown RBP14.52□□□□□ -0.09
SLIRP-209ENST00000557342 LZTS2Q9BRK4 669 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 USP26Q9BXU7 913 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 LRRC2Q9BYS8 371 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 RIOX1Q9H6W3 641 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 GPHNQ9NQX3 736 aaPredicted RBP14.52□□□□□ -0.09
SLIRP-209ENST00000557342 CYP39A1Q9NYL5 469 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 DDX20Q9UHI6 824 aaKnown RBP14.52□□□□□ -0.09
SLIRP-209ENST00000557342 CNPY2Q9Y2B0 182 aa14.52□□□□□ -0.09
SLIRP-209ENST00000557342 PTPDC1A2A3K4 754 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 ASB14A6NK59 587 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 ZBTB5O15062 677 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 SEPT4O43236 478 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 SMARCA1P28370 1054 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 FGD1P98174 961 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 RNF207Q6ZRF8 634 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 RGS22Q8NE09 1264 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 CLEC4DQ8WXI8 215 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 MTMR8Q96EF0 704 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 AMNQ9BXJ7 453 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 ADD3Q9UEY8 706 aaKnown RBP14.51□□□□□ -0.09
SLIRP-209ENST00000557342 OGDHLQ9ULD0 1010 aa14.51□□□□□ -0.09
SLIRP-209ENST00000557342 MRPL11Q9Y3B7 192 aaKnown RBP14.51□□□□□ -0.09
SLIRP-209ENST00000557342 LOC102724159A0A0B4J2E5 919 aa14.5□□□□□ -0.09
SLIRP-209ENST00000557342 NFIBO00712 420 aa14.5□□□□□ -0.09
SLIRP-209ENST00000557342 FARP2O94887 1054 aaPredicted RBP14.5□□□□□ -0.09
SLIRP-209ENST00000557342 TAL1P17542 331 aaPredicted RBP14.5□□□□□ -0.09
SLIRP-209ENST00000557342 COL9A3Q14050 684 aaPredicted RBP14.5□□□□□ -0.09
SLIRP-209ENST00000557342 PWP2Q15269 919 aaKnown RBP14.5□□□□□ -0.09
SLIRP-209ENST00000557342 MCF2L2Q86YR7 1114 aa14.5□□□□□ -0.09
SLIRP-209ENST00000557342 TRPV1Q8NER1 839 aa14.5□□□□□ -0.09
SLIRP-209ENST00000557342 MYL10Q9BUA6 226 aa14.5□□□□□ -0.09
SLIRP-209ENST00000557342 SOWAHBA6NEL2 793 aa14.49□□□□□ -0.09
SLIRP-209ENST00000557342 CNTN2Q02246 1040 aa14.49□□□□□ -0.09
SLIRP-209ENST00000557342 BAATQ14032 418 aaPredicted RBP14.49□□□□□ -0.09
SLIRP-209ENST00000557342 PRAMEF19Q5SWL8 479 aa14.49□□□□□ -0.09
SLIRP-209ENST00000557342 LHX8Q68G74 356 aa14.49□□□□□ -0.09
SLIRP-209ENST00000557342 ARMCX2Q7L311 632 aa14.49□□□□□ -0.09
SLIRP-209ENST00000557342 HOMER1Q86YM7 354 aa14.49□□□□□ -0.09
SLIRP-209ENST00000557342 FGD4Q96M96 766 aa14.49□□□□□ -0.09
SLIRP-209ENST00000557342 TCEANC2Q96MN5 208 aa14.49□□□□□ -0.09
SLIRP-209ENST00000557342 MPHOSPH6Q99547 160 aaKnown RBP14.49□□□□□ -0.09
SLIRP-209ENST00000557342 SPZ1Q9BXG8 430 aa14.49□□□□□ -0.09
SLIRP-209ENST00000557342 ABHD16BQ9H3Z7 469 aa14.49□□□□□ -0.09
SLIRP-209ENST00000557342 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.49□□□□□ -0.09
SLIRP-209ENST00000557342 LRRC37A2A6NM11 1700 aa14.49□□□□□ -0.09
SLIRP-209ENST00000557342 PNMA6FA0A0J9YX94 578 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 B4DLN1 442 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 ZBTB43O43298 467 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 CYTH3O43739 400 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 SNAI1O95863 264 aaPredicted RBP14.48□□□□□ -0.09
SLIRP-209ENST00000557342 ZNF865P0CJ78 1059 aaPredicted RBP14.48□□□□□ -0.09
SLIRP-209ENST00000557342 AKR1A1P14550 325 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 RPS6KB1P23443 525 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 CALML3P27482 149 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 MRPL12P52815 198 aaKnown RBP14.48□□□□□ -0.09
SLIRP-209ENST00000557342 RCAN1P53805 252 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 RPS6P62753 249 aaKnown RBP14.48□□□□□ -0.09
SLIRP-209ENST00000557342 APOA5Q6Q788 366 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 NECAB2Q7Z6G3 386 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 UBE2Q1Q7Z7E8 422 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 MICU3Q86XE3 530 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 CCDC144CPQ8IYA2 1237 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 FBXL16Q8N461 479 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 SAMD3Q8N6K7 520 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 FANCBQ8NB91 859 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 RRP36Q96EU6 259 aaKnown RBP14.48□□□□□ -0.09
SLIRP-209ENST00000557342 PIGSQ96S52 555 aa14.48□□□□□ -0.09
SLIRP-209ENST00000557342 RBM28Q9NW13 759 aaKnown RBP14.48□□□□□ -0.09
SLIRP-209ENST00000557342 RARBP10826 455 aa14.47□□□□□ -0.09
SLIRP-209ENST00000557342 RXRAP19793 462 aa14.47□□□□□ -0.09
SLIRP-209ENST00000557342 CASTP20810 708 aaKnown RBP14.47□□□□□ -0.09
SLIRP-209ENST00000557342 ALDH5A1P51649 535 aaPredicted RBP14.47□□□□□ -0.09
SLIRP-209ENST00000557342 ACVR2BQ13705 512 aa14.47□□□□□ -0.09
SLIRP-209ENST00000557342 SLC30A10Q6XR72 485 aa14.47□□□□□ -0.09
SLIRP-209ENST00000557342 Q6ZUG5 572 aa14.47□□□□□ -0.09
SLIRP-209ENST00000557342 ARRDC4Q8NCT1 418 aa14.47□□□□□ -0.09
SLIRP-209ENST00000557342 DNERQ8NFT8 737 aa14.47□□□□□ -0.09
SLIRP-209ENST00000557342 HTATIP2Q9BUP3 242 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms