RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PFASO15067 1338 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 ZBTB5O15062 677 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 ZBTB43O43298 467 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 MLLT1Q03111 559 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-228ENST00000557302 C1QBPQ07021 282 aaKnown RBP15.78■□□□□ 0.12
SHMT2-228ENST00000557302 MTFR1Q15390 333 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 SLC35G1Q2M3R5 365 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 ZNF792Q3KQV3 632 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 MUM1L1Q5H9M0 696 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 OLFML2BQ68BL8 750 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 NSMFQ6X4W1 530 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 FBXO11Q86XK2 927 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 HOMER1Q86YM7 354 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 MTMR8Q96EF0 704 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 SPZ1Q9BXG8 430 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 AGXT2Q9BYV1 514 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 A1CFQ9NQ94 594 aaKnown RBP15.78■□□□□ 0.12
SHMT2-228ENST00000557302 FLRT1Q9NZU1 646 aa15.78■□□□□ 0.12
SHMT2-228ENST00000557302 NAP1L2Q9ULW6 460 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-228ENST00000557302 DIS3Q9Y2L1 958 aaKnown RBP15.78■□□□□ 0.12
SHMT2-228ENST00000557302 ABCB11O95342 1321 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 DNAJC25-GNG10A0A024R161 153 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 GOLGA8AA7E2F4 631 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 GOLGA8BA8MQT2 603 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 CYTH3O43739 400 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 PLEKHA8P1O95397 391 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 CCL5P13501 91 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 PRKAR2AP13861 404 aaKnown RBP15.77■□□□□ 0.12
SHMT2-228ENST00000557302 SMARCA1P28370 1054 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 RCAN1P53805 252 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 APOBRQ0VD83 1088 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 TRIM32Q13049 653 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 RTN1Q16799 776 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 MAML3Q96JK9 1138 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 PIGSQ96S52 555 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 AMNQ9BXJ7 453 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 RNF208Q9H0X6 261 aa15.77■□□□□ 0.12
SHMT2-228ENST00000557302 RBM28Q9NW13 759 aaKnown RBP15.77■□□□□ 0.12
SHMT2-228ENST00000557302 POTEB2H3BUK9 544 aa15.76■□□□□ 0.11
SHMT2-228ENST00000557302 NFIBO00712 420 aa15.76■□□□□ 0.11
SHMT2-228ENST00000557302 SOX10P56693 466 aa15.76■□□□□ 0.11
SHMT2-228ENST00000557302 TRAF1Q13077 416 aa15.76■□□□□ 0.11
SHMT2-228ENST00000557302 MAP3K21Q5TCX8 1036 aa15.76■□□□□ 0.11
SHMT2-228ENST00000557302 TMTC3Q6ZXV5 915 aa15.76■□□□□ 0.11
SHMT2-228ENST00000557302 CLEC4DQ8WXI8 215 aa15.76■□□□□ 0.11
SHMT2-228ENST00000557302 RRP36Q96EU6 259 aaKnown RBP15.76■□□□□ 0.11
SHMT2-228ENST00000557302 UNC93B1Q9H1C4 597 aa15.76■□□□□ 0.11
SHMT2-228ENST00000557302 PDRG1Q9NUG6 133 aa15.76■□□□□ 0.11
SHMT2-228ENST00000557302 CYP39A1Q9NYL5 469 aa15.76■□□□□ 0.11
SHMT2-228ENST00000557302 RPTORQ8N122 1335 aa15.75■□□□□ 0.11
SHMT2-228ENST00000557302 PNMA6FA0A0J9YX94 578 aa15.75■□□□□ 0.11
SHMT2-228ENST00000557302 PTPDC1A2A3K4 754 aa15.75■□□□□ 0.11
SHMT2-228ENST00000557302 CYP2C19P33261 490 aa15.75■□□□□ 0.11
SHMT2-228ENST00000557302 METAP2P50579 478 aaKnown RBP eCLIP15.75■□□□□ 0.115e-7■■■□□ 16.2
SHMT2-228ENST00000557302 CACNB2Q08289 660 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-228ENST00000557302 SRBD1Q8N5C6 995 aaKnown RBP15.75■□□□□ 0.11
SHMT2-228ENST00000557302 PIBF1Q8WXW3 757 aa15.75■□□□□ 0.11
SHMT2-228ENST00000557302 IL17RAQ96F46 866 aa15.75■□□□□ 0.11
SHMT2-228ENST00000557302 HMX1Q9NP08 348 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-228ENST00000557302 SEC63Q9UGP8 760 aaKnown RBP15.75■□□□□ 0.11
SHMT2-228ENST00000557302 MRPL11Q9Y3B7 192 aaKnown RBP15.75■□□□□ 0.11
SHMT2-228ENST00000557302 PCDHA1Q9Y5I3 950 aa15.75■□□□□ 0.11
SHMT2-228ENST00000557302 KIAA0100Q14667 2235 aaKnown RBP15.75■□□□□ 0.11
SHMT2-228ENST00000557302 PPP1R11O60927 126 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-228ENST00000557302 IGHA2P01877 340 aa15.74■□□□□ 0.11
SHMT2-228ENST00000557302 BAATQ14032 418 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-228ENST00000557302 TOB2Q14106 344 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-228ENST00000557302 PPP2R5BQ15173 497 aa15.74■□□□□ 0.11
SHMT2-228ENST00000557302 RNF207Q6ZRF8 634 aa15.74■□□□□ 0.11
SHMT2-228ENST00000557302 ZNF467Q7Z7K2 595 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-228ENST00000557302 MCF2L2Q86YR7 1114 aa15.74■□□□□ 0.11
SHMT2-228ENST00000557302 CMTR1Q8N1G2 835 aaKnown RBP15.74■□□□□ 0.11
SHMT2-228ENST00000557302 MSL3Q8N5Y2 521 aaKnown RBP15.74■□□□□ 0.11
SHMT2-228ENST00000557302 FAM133AQ8N9E0 248 aa15.74■□□□□ 0.11
SHMT2-228ENST00000557302 RGS22Q8NE09 1264 aa15.74■□□□□ 0.11
SHMT2-228ENST00000557302 TINF2Q9BSI4 451 aa15.74■□□□□ 0.11
SHMT2-228ENST00000557302 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.74■□□□□ 0.111e-6■□□□□ 8.2
SHMT2-228ENST00000557302 CCDC196A0A1B0GTZ2 297 aa15.73■□□□□ 0.11
SHMT2-228ENST00000557302 GJB1P08034 283 aa15.73■□□□□ 0.11
SHMT2-228ENST00000557302 EVCP57679 992 aa15.73■□□□□ 0.11
SHMT2-228ENST00000557302 CNTN2Q02246 1040 aa15.73■□□□□ 0.11
SHMT2-228ENST00000557302 CCDC82Q8N4S0 544 aa15.73■□□□□ 0.11
SHMT2-228ENST00000557302 MAF1Q9H063 256 aa15.73■□□□□ 0.11
SHMT2-228ENST00000557302 UPF2Q9HAU5 1272 aaKnown RBP15.73■□□□□ 0.11
SHMT2-228ENST00000557302 PAK6Q9NQU5 681 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-228ENST00000557302 BAZ2BQ9UIF8 2168 aaKnown RBP15.73■□□□□ 0.11
SHMT2-228ENST00000557302 MKI67P46013 3256 aaKnown RBP15.72■□□□□ 0.11
SHMT2-228ENST00000557302 ZNFX1Q9P2E3 1918 aaKnown RBP15.72■□□□□ 0.11
SHMT2-228ENST00000557302 SYNGAP1Q96PV0 1343 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 SMCHD1A6NHR9 2005 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 POTEFA5A3E0 1075 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 CYBAP13498 195 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 CALML3P27482 149 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 CDC27P30260 824 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 RPS6P62753 249 aaKnown RBP15.72■□□□□ 0.11
SHMT2-228ENST00000557302 MAMDC4Q6UXC1 1216 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 SLC30A10Q6XR72 485 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 FGD4Q96M96 766 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 DEFB118Q96PH6 123 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 C22orf23Q9BZE7 217 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms