RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	SNAP47	Q5SQN1	464 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	TMEM132E	Q6IEE7	984 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	HS2ST1	Q7LGA3	356 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	UBE3D	Q7Z6J8	389 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	TTC6	Q86TZ1	520 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	CDH24	Q86UP0	819 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	HSCB	Q8IWL3	235 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	SLFN12	Q8IYM2	578 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	XAGE3	Q8WTP9	111 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	MYLIP	Q8WY64	445 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	UBE2F	Q969M7	185 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	HSPA12B	Q96MM6	686 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	GBP4	Q96PP9	640 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	KRTAP3-1	Q9BYR8	98 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	RNF19A	Q9NV58	838 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	GPATCH2	Q9NW75	528 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	TJP2	Q9UDY2	1190 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	ANKRD50	Q9ULJ7	1429 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	CAPN6	Q9Y6Q1	641 aa		3.57	□□□□□ -1.84
SLIRP-208	ENST00000556956	POLR1A	O95602	1720 aa	Predicted RBP	3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	BCORL1	Q5H9F3	1711 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	DNMT1	P26358	1616 aa	Known RBP	3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	CEP170	Q5SW79	1584 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	CAMSAP2	Q08AD1	1489 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	ERBIN	Q96RT1	1412 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	GPRASP1	Q5JY77	1395 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	PRR36	Q9H6K5	1346 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	FAM221A	A4D161	298 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	MINDY4B	A8MYZ0	360 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	RAC2	P15153	192 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	CDK8	P49336	464 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	CALD1	Q05682	793 aa	Known RBP	3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	CCDC173	Q0VFZ6	552 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	TMCO4	Q5TGY1	634 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	BNC2	Q6ZN30	1099 aa	Predicted RBP	3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	MTERF4	Q7Z6M4	381 aa	Known RBP	3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	ZNF575	Q86XF7	245 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	GOLM1	Q8NBJ4	401 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	FAM13C	Q8NE31	585 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	RIN3	Q8TB24	985 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	CYB5D2	Q8WUJ1	264 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	CCDC74B	Q96LY2	380 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	ALPK1	Q96QP1	1244 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	ASCC2	Q9H1I8	757 aa	Predicted RBP	3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	LUC7L	Q9NQ29	371 aa	Known RBP	3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	ZSWIM5	Q9P217	1185 aa		3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	CNOT11	Q9UKZ1	510 aa	Known RBP	3.56	□□□□□ -1.84
SLIRP-208	ENST00000556956	SHROOM2	Q13796	1616 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	ZNF608	Q9ULD9	1512 aa	Predicted RBP	3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	NKTR	P30414	1462 aa	Known RBP	3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	TRO	Q12816	1431 aa	Predicted RBP	3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	PRAG1	Q86YV5	1406 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	NPC1L1	Q9UHC9	1359 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	PLEKHH1	Q9ULM0	1364 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	PLEKHD1	A6NEE1	506 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	C1QTNF3-AMACR	E9PGA6	284 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	GOLGA6L22	H0YM25	854 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956		H3BS24	57 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	BCAR3	O75815	825 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	F13A1	P00488	732 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	MSN	P26038	577 aa	Known RBP	3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	GBP1	P32455	592 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	EIF4A3	P38919	411 aa	Known RBP	3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	RAD51AP2	Q09MP3	1159 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	LRRFIP1	Q32MZ4	808 aa	Known RBP	3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	HS1BP3	Q53T59	392 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	FAM196A	Q6ZSG2	479 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	WDR63	Q8IWG1	891 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	GIPC2	Q8TF65	315 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	DHX38	Q92620	1227 aa	Known RBP	3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	SNX21	Q969T3	373 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	ACSF2	Q96CM8	615 aa	Predicted RBP	3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	TESK2	Q96S53	571 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	PPP1R9B	Q96SB3	815 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	C22orf23	Q9BZE7	217 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	GGT7	Q9UJ14	662 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	ST14	Q9Y5Y6	855 aa		3.55	□□□□□ -1.84
SLIRP-208	ENST00000556956	CDK13	Q14004	1512 aa	Known RBP	3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	SYNJ2	O15056	1496 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	GRIN2A	Q12879	1464 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	PIK3C2G	O75747	1445 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	NUP160	Q12769	1436 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	DNAJC25-GNG10	A0A024R161	153 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	PRR33	A8MZF0	331 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	APAF1	O14727	1248 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	OFD1	O75665	1012 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	HTR3B	O95264	441 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	HSP90AB1	P08238	724 aa	Known RBP	3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	CT47B1	P0C2W7	299 aa	Predicted RBP	3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	NCL	P19338	710 aa	Known RBP	3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	TNK2	Q07912	1038 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	RGL3	Q3MIN7	710 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	RALGPS1	Q5JS13	557 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	REC114	Q7Z4M0	266 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	PHACTR4	Q8IZ21	702 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	ENOX1	Q8TC92	643 aa	Known RBP	3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	RNF141	Q8WVD5	230 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	RHOV	Q96L33	236 aa		3.54	□□□□□ -1.84
SLIRP-208	ENST00000556956	DPH2	Q9BQC3	489 aa	Predicted RBP	3.54	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms