RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CACNA2D4Q7Z3S7 1137 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 CPLX4Q7Z7G2 160 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 CCDC65Q8IXS2 484 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 SNRNP27Q8WVK2 155 aaKnown RBP15.24■□□□□ 0.03
SHMT2-226ENST00000556825 PRCCQ92733 491 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-226ENST00000556825 CTNNAL1Q9UBT7 734 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 SLC12A6Q9UHW9 1150 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 DMGDHQ9UI17 866 aaKnown RBP15.24■□□□□ 0.03
SHMT2-226ENST00000556825 E7ENQ6 273 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 PDE2AO00408 941 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-226ENST00000556825 MFAP3LO75121 409 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 WFS1O76024 890 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 GNAZP19086 355 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 MAEAQ7L5Y9 396 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 ADAM22Q9P0K1 906 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 TMED5Q9Y3A6 229 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 MINK1Q8N4C8 1332 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-226ENST00000556825 NFE2L2Q16236 605 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 USH1GQ495M9 461 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 ARHGAP18Q8N392 663 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 ANKS4BQ8N8V4 417 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 RAPGEF5Q92565 580 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 PTPRN2Q92932 1015 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 LRRC1Q9BTT6 524 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 WWC3Q9ULE0 1092 aa15.23■□□□□ 0.03
SHMT2-226ENST00000556825 HOXD12P35452 270 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 KCNJ2P63252 427 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 ATP11AP98196 1134 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 ITIH3Q06033 890 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 ITIH4Q14624 930 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 RUFY4Q6ZNE9 571 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 MREGQ8N565 214 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 LINC00301Q8NCQ3 95 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 KCNG4Q8TDN1 519 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 NOC3LQ8WTT2 800 aaKnown RBP15.22■□□□□ 0.03
SHMT2-226ENST00000556825 HINFPQ9BQA5 517 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 TMBIM4Q9HC24 238 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 FRMD4BQ9Y2L6 1034 aa15.22■□□□□ 0.03
SHMT2-226ENST00000556825 RBM8AQ9Y5S9 174 aaKnown RBP15.22■□□□□ 0.03
SHMT2-226ENST00000556825 A0A1B0GTH6 734 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 TMEM247A6NEH6 219 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 F8W031 263 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-226ENST00000556825 ORC4O43929 436 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 ACADSP16219 412 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 HOXA10P31260 410 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-226ENST00000556825 HPDP32754 393 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-226ENST00000556825 ATP8B2P98198 1209 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 IRGCQ6NXR0 463 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 FNBP4Q8N3X1 1017 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-226ENST00000556825 AIDAQ96BJ3 306 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 ATP8A2Q9NTI2 1148 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 GUCA1BQ9UMX6 200 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 HIP1RO75146 1068 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 SUPT3HO75486 399 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 SULT2A1Q06520 285 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 COL9A3Q14050 684 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-226ENST00000556825 EZH2Q15910 746 aaKnown RBP15.21■□□□□ 0.03
SHMT2-226ENST00000556825 KLHL10Q6JEL2 608 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 CNGA4Q8IV77 575 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 NEK9Q8TD19 979 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 CPLX3Q8WVH0 158 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 RSPH1Q8WYR4 309 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 TCEANC2Q96MN5 208 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 CARD9Q9H257 536 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 SCOCQ9UIL1 159 aa15.21■□□□□ 0.03
SHMT2-226ENST00000556825 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-226ENST00000556825 STIP1P31948 543 aaKnown RBP15.2■□□□□ 0.02
SHMT2-226ENST00000556825 MLH1P40692 756 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 LACTBP83111 547 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-226ENST00000556825 STK38Q15208 465 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 HSP90AA4PQ58FG1 418 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 ZNF554Q86TJ5 538 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 CTNNBL1Q8WYA6 563 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-226ENST00000556825 LLPHQ9BRT6 129 aaKnown RBP15.2■□□□□ 0.02
SHMT2-226ENST00000556825 HAUS4Q9H6D7 363 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 RMND1Q9NWS8 449 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 TUBA8Q9NY65 449 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-226ENST00000556825 PHF20L1A8MW92 1017 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 ZMYM6O95789 1325 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 PFKFB1P16118 471 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 CMA1P23946 247 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 SH3BGRP55822 239 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-226ENST00000556825 ZNF572Q7Z3I7 529 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-226ENST00000556825 UBR1Q8IWV7 1749 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 STIM2Q9P246 746 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 CROTQ9UKG9 612 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 AGAP1Q9UPQ3 857 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 DAAM1Q9Y4D1 1078 aa15.2■□□□□ 0.02
SHMT2-226ENST00000556825 EIF3FO00303 357 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-226ENST00000556825 ATP9BO43861 1147 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 GBP1P32455 592 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 ERVK-24P63145 666 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 PDE4BQ07343 736 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 MCL1Q07820 350 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 LSAMPQ13449 338 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 NANOGNBQ7Z5D8 188 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 FBF1Q8TES7 1133 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 WDR60Q8WVS4 1066 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 NFE2L3Q9Y4A8 694 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 DLC1Q96QB1 1528 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms