RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 EXOC6BQ9Y2D4 811 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 MYH8P13535 1937 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.08□□□□□ -0.48
SCFD1-220ENST00000556486 MYADML2A6NDP7 307 aa12.08□□□□□ -0.48
SCFD1-220ENST00000556486 DCDC2CA8MYV0 355 aa12.08□□□□□ -0.48
SCFD1-220ENST00000556486 FLOT1O75955 427 aa12.08□□□□□ -0.48
SCFD1-220ENST00000556486 CSF2RAP15509 400 aa12.08□□□□□ -0.48
SCFD1-220ENST00000556486 MRPS5P82675 430 aaKnown RBP12.08□□□□□ -0.48
SCFD1-220ENST00000556486 ADGRD1Q6QNK2 874 aa12.08□□□□□ -0.48
SCFD1-220ENST00000556486 RNF180Q86T96 592 aa12.08□□□□□ -0.48
SCFD1-220ENST00000556486 RHPN1Q8TCX5 695 aa12.08□□□□□ -0.48
SCFD1-220ENST00000556486 STARD7Q9NQZ5 370 aa12.08□□□□□ -0.48
SCFD1-220ENST00000556486 USTQ9Y2C2 406 aa12.08□□□□□ -0.48
SCFD1-220ENST00000556486 TCRBV5S4A2TA0A5A2 114 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 BRD1O95696 1058 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 TIMP1P01033 207 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 POLR3DP05423 398 aaPredicted RBP12.07□□□□□ -0.48
SCFD1-220ENST00000556486 CYP2D6P10635 497 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 FCER1AP12319 257 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 PDE6AP16499 860 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 KCNQ1P51787 676 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 ACLYP53396 1101 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 TMEM240Q5SV17 173 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 ZNF365Q70YC5 407 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 RPAP2Q8IXW5 612 aaPredicted RBP12.07□□□□□ -0.48
SCFD1-220ENST00000556486 RDH13Q8NBN7 331 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 SHCBP1Q8NEM2 672 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 TATDN2Q93075 761 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 KIF1BPQ96EK5 621 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 MMP19Q99542 508 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 ZBTB40Q9NUA8 1239 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 SLC5A4Q9NY91 659 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 HOXC10Q9NYD6 342 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 SYNRGQ9UMZ2 1314 aa12.07□□□□□ -0.48
SCFD1-220ENST00000556486 ADAMTS4O75173 837 aa12.06□□□□□ -0.48
SCFD1-220ENST00000556486 ZNF865P0CJ78 1059 aaPredicted RBP12.06□□□□□ -0.48
SCFD1-220ENST00000556486 KCNA1Q09470 495 aa12.06□□□□□ -0.48
SCFD1-220ENST00000556486 TMEM132BQ14DG7 1078 aa12.06□□□□□ -0.48
SCFD1-220ENST00000556486 SLC9C2Q5TAH2 1124 aa12.06□□□□□ -0.48
SCFD1-220ENST00000556486 CLASRPQ8N2M8 674 aaKnown RBP12.06□□□□□ -0.48
SCFD1-220ENST00000556486 PANK1Q8TE04 598 aa12.06□□□□□ -0.48
SCFD1-220ENST00000556486 VTI1AQ96AJ9 217 aa12.06□□□□□ -0.48
SCFD1-220ENST00000556486 TINF2Q9BSI4 451 aa12.06□□□□□ -0.48
SCFD1-220ENST00000556486 CRNKL1Q9BZJ0 848 aaKnown RBP12.06□□□□□ -0.48
SCFD1-220ENST00000556486 MROH8Q9H579 483 aa12.06□□□□□ -0.48
SCFD1-220ENST00000556486 FBXO28Q9NVF7 368 aa12.06□□□□□ -0.48
SCFD1-220ENST00000556486 CXXC1Q9P0U4 656 aaPredicted RBP12.06□□□□□ -0.48
SCFD1-220ENST00000556486 TBX21Q9UL17 535 aa12.06□□□□□ -0.48
SCFD1-220ENST00000556486 YBX2Q9Y2T7 364 aaKnown RBP12.06□□□□□ -0.48
SCFD1-220ENST00000556486 MAGEB6P1A0A0J9YX57 407 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 SMIM22K7EJ46 135 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 HMMRO75330 724 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 MYOGP15173 224 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 CYP2C18P33260 490 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 SLC4A3P48751 1232 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 RABGGTBP53611 331 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 USP46P62068 366 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 KCNA10Q16322 511 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 AKNAD1Q5T1N1 836 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 MFSD5Q6N075 450 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 ANKRD33Q7Z3H0 272 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 SIRT2Q8IXJ6 389 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 DYNLL2Q96FJ2 89 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 IL1RAPL2Q9NP60 686 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 DCP1AQ9NPI6 582 aaPredicted RBP12.05□□□□□ -0.48
SCFD1-220ENST00000556486 ZHX1Q9UKY1 873 aaPredicted RBP12.05□□□□□ -0.48
SCFD1-220ENST00000556486 DDX19BQ9UMR2 479 aa12.05□□□□□ -0.48
SCFD1-220ENST00000556486 PPP1R3GB7ZBB8 358 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 HRO43593 1189 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 RAB11FIP3O75154 756 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 FDX1P10109 184 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 AKR1A1P14550 325 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 PPIGQ13427 754 aaKnown RBP eCLIP12.04□□□□□ -0.483e-8■□□□□ 8.9
SCFD1-220ENST00000556486 ZNF792Q3KQV3 632 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 FOXD4L5Q5VV16 416 aaPredicted RBP12.04□□□□□ -0.48
SCFD1-220ENST00000556486 TMEM179Q6ZVK1 233 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 ABRAQ8N0Z2 381 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 FOXD4L4Q8WXT5 416 aaPredicted RBP12.04□□□□□ -0.48
SCFD1-220ENST00000556486 SLC4A5Q9BY07 1137 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 BCL11AQ9H165 835 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 EPHX3Q9H6B9 360 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 MCM9Q9NXL9 1143 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 SWAP70Q9UH65 585 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 MSRAQ9UJ68 235 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 MCM3APO60318 1980 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 TRANK1O15050 2925 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 UMODL1Q5DID0 1318 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 ZNF532Q9HCE3 1301 aa12.04□□□□□ -0.48
SCFD1-220ENST00000556486 NCOR1O75376 2440 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 BAZ2AQ9UIF9 1905 aaKnown RBP12.03□□□□□ -0.48
SCFD1-220ENST00000556486 RFXAPO00287 272 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 GOLIM4O00461 696 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 ADCY6O43306 1168 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 HOXA2O43364 376 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 C6orf222P0C671 652 aaPredicted RBP12.03□□□□□ -0.48
SCFD1-220ENST00000556486 AKR1B1P15121 316 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 ATP5JP18859 108 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 CTDSPL2Q05D32 466 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 KCTD2Q14681 263 aa12.03□□□□□ -0.48
SCFD1-220ENST00000556486 SIAH1Q8IUQ4 282 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms