RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 DDX11Q96FC9 970 aa12.84□□□□□ -0.35
SYNE2-221ENST00000556342 ZFRQ96KR1 1074 aaKnown RBP12.84□□□□□ -0.35
SYNE2-221ENST00000556342 NUP88Q99567 741 aaPredicted RBP12.84□□□□□ -0.35
SYNE2-221ENST00000556342 SLF1Q9BQI6 1058 aa12.84□□□□□ -0.35
SYNE2-221ENST00000556342 ARPP21Q9UBL0 812 aaPredicted RBP12.84□□□□□ -0.35
SYNE2-221ENST00000556342 ZHX1Q9UKY1 873 aaPredicted RBP12.84□□□□□ -0.35
SYNE2-221ENST00000556342 TBX21Q9UL17 535 aa12.84□□□□□ -0.35
SYNE2-221ENST00000556342 RIPK3Q9Y572 518 aa12.84□□□□□ -0.35
SYNE2-221ENST00000556342 BAZ2AQ9UIF9 1905 aaKnown RBP12.84□□□□□ -0.35
SYNE2-221ENST00000556342 COL11A1P12107 1806 aaPredicted RBP12.83□□□□□ -0.35
SYNE2-221ENST00000556342 MYADML2A6NDP7 307 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 DUSP11O75319 330 aaKnown RBP12.83□□□□□ -0.36
SYNE2-221ENST00000556342 TIMP1P01033 207 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 MS4A1P11836 297 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 RASA1P20936 1047 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 CST5P28325 142 aaPredicted RBP12.83□□□□□ -0.36
SYNE2-221ENST00000556342 KCNA10Q16322 511 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 ZSCAN25Q6NSZ9 544 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 USP38Q8NB14 1042 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 SYMPKQ92797 1274 aaKnown RBP12.83□□□□□ -0.36
SYNE2-221ENST00000556342 GLT1D1Q96MS3 346 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.83□□□□□ -0.36
SYNE2-221ENST00000556342 PUS7LQ9H0K6 701 aaKnown RBP12.83□□□□□ -0.36
SYNE2-221ENST00000556342 PRDM6Q9NQX0 595 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 ZBTB40Q9NUA8 1239 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 NYAP2Q9P242 653 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 MYH8P13535 1937 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 ZNFX1Q9P2E3 1918 aaKnown RBP12.83□□□□□ -0.36
SYNE2-221ENST00000556342 MUC3AQ02505 3323 aa12.83□□□□□ -0.36
SYNE2-221ENST00000556342 F5H6K3 240 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 ATP2A1O14983 1001 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 NDUFB10O96000 172 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 C6orf222P0C671 652 aaPredicted RBP12.82□□□□□ -0.36
SYNE2-221ENST00000556342 CDK7P50613 346 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 KLRC3Q07444 240 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 PTGDRQ13258 359 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 MFSD5Q6N075 450 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 CPXCR1Q8N123 301 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 PRPF38AQ8NAV1 312 aaKnown RBP12.82□□□□□ -0.36
SYNE2-221ENST00000556342 TIFAQ96CG3 184 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 ZNF576Q9H609 170 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 DDX19BQ9UMR2 479 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 ELP1O95163 1332 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 MROH7Q68CQ1 1323 aa12.82□□□□□ -0.36
SYNE2-221ENST00000556342 PLXNA1Q9UIW2 1896 aa12.81□□□□□ -0.36
SYNE2-221ENST00000556342 ADCY6O43306 1168 aa12.81□□□□□ -0.36
SYNE2-221ENST00000556342 SLC4A3P48751 1232 aa12.81□□□□□ -0.36
SYNE2-221ENST00000556342 PPIGQ13427 754 aaKnown RBP eCLIP12.81□□□□□ -0.36
SYNE2-221ENST00000556342 ACVR2BQ13705 512 aa12.81□□□□□ -0.36
SYNE2-221ENST00000556342 SBK1Q52WX2 424 aa12.81□□□□□ -0.36
SYNE2-221ENST00000556342 TJAP1Q5JTD0 557 aa12.81□□□□□ -0.36
SYNE2-221ENST00000556342 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.81□□□□□ -0.36
SYNE2-221ENST00000556342 PCSK9Q8NBP7 692 aaKnown RBP12.81□□□□□ -0.36
SYNE2-221ENST00000556342 FGD4Q96M96 766 aa12.81□□□□□ -0.36
SYNE2-221ENST00000556342 STRBPQ96SI9 672 aaKnown RBP12.81□□□□□ -0.36
SYNE2-221ENST00000556342 MKNK2Q9HBH9 465 aa12.81□□□□□ -0.36
SYNE2-221ENST00000556342 SPC25Q9HBM1 224 aa12.81□□□□□ -0.36
SYNE2-221ENST00000556342 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-221ENST00000556342 COG6Q9Y2V7 657 aa12.81□□□□□ -0.36
SYNE2-221ENST00000556342 IGKV6D-41A0A0C4DH26 115 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 GSG1L2A8MUP6 293 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 ARVCFO00192 962 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 ZBED4O75132 1171 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 ASGR1P07306 291 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 PTPN5P54829 565 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 GJA9P57773 515 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 CCDC144BQ3MJ40 725 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 TMEM240Q5SV17 173 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 RASIP1Q5U651 963 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 GIMAP6Q6P9H5 292 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 CCDC174Q6PII3 467 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 PADI6Q6TGC4 694 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 C16orf59Q7L2K0 433 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 STK11IPQ8N1F8 1099 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 TATDN2Q93075 761 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 PBX4Q9BYU1 374 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 UPF3AQ9H1J1 476 aaKnown RBP12.8□□□□□ -0.36
SYNE2-221ENST00000556342 ABHD16BQ9H3Z7 469 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 SLC38A10Q9HBR0 1119 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 RAVER2Q9HCJ3 691 aaKnown RBP12.8□□□□□ -0.36
SYNE2-221ENST00000556342 CLIP2Q9UDT6 1046 aa12.8□□□□□ -0.36
SYNE2-221ENST00000556342 CTDP1Q9Y5B0 961 aaPredicted RBP12.8□□□□□ -0.36
SYNE2-221ENST00000556342 GREB1LQ9C091 1923 aaPredicted RBP12.8□□□□□ -0.36
SYNE2-221ENST00000556342 CHD9Q3L8U1 2897 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 A0A0U1RQG5 324 aaPredicted RBP12.79□□□□□ -0.36
SYNE2-221ENST00000556342 SOWAHBA6NEL2 793 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 MINDY4BA8MYZ0 360 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 CSF2RAP15509 400 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 GNASQ5JWF2 1037 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 CCDC129Q6ZRS4 1044 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 ARMCX2Q7L311 632 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 FAM126BQ8IXS8 530 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 ANKRD35Q8N283 1001 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 TMEM199Q8N511 208 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 KIFC2Q96AC6 838 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 VTI1AQ96AJ9 217 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 PPP1R12CQ9BZL4 782 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 FBXO40Q9UH90 709 aa12.79□□□□□ -0.36
SYNE2-221ENST00000556342 GRXCR1A8MXD5 290 aa12.78□□□□□ -0.36
SYNE2-221ENST00000556342 CTAGE5O15320 804 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms