RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 METTL23Q86XA0 190 aa9.05□□□□□ -0.96
SYNE2-220ENST00000555612 FTOQ9C0B1 505 aaKnown RBP eCLIP9.05□□□□□ -0.96
SYNE2-220ENST00000555612 SPON1Q9HCB6 807 aa9.05□□□□□ -0.96
SYNE2-220ENST00000555612 SLC39A2Q9NP94 309 aa9.05□□□□□ -0.96
SYNE2-220ENST00000555612 DISC1Q9NRI5 854 aa9.05□□□□□ -0.96
SYNE2-220ENST00000555612 SYNE4Q8N205 404 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 BSDC1Q9NW68 430 aaPredicted RBP9.04□□□□□ -0.96
SYNE2-220ENST00000555612 NKIRAS1Q9NYS0 192 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 ARMCX3Q9UH62 379 aaPredicted RBP9.04□□□□□ -0.96
SYNE2-220ENST00000555612 MAN1A1P33908 653 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 C8orf74Q6P047 294 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 CCDC84Q86UT8 332 aaPredicted RBP9.04□□□□□ -0.96
SYNE2-220ENST00000555612 COA7Q96BR5 231 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 CEP170P1Q96L14 293 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 WRNIP1Q96S55 665 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 NARFQ9UHQ1 456 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 ADCY9O60503 1353 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 EIF2AK2P19525 551 aaKnown RBP9.04□□□□□ -0.96
SYNE2-220ENST00000555612 TPD52P55327 224 aaPredicted RBP9.04□□□□□ -0.96
SYNE2-220ENST00000555612 MTERF2Q49AM1 385 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 DAAM2Q86T65 1068 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 KLHL7Q8IXQ5 586 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 KIF9Q9HAQ2 790 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 GPR108Q9NPR9 543 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 ZHX2Q9Y6X8 837 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 KDM5AP29375 1690 aaKnown RBP9.04□□□□□ -0.96
SYNE2-220ENST00000555612 TUBB4AP04350 444 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 MARK3P27448 753 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 STAT1P42224 750 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 FAM49AQ9H0Q0 323 aaPredicted RBP9.04□□□□□ -0.96
SYNE2-220ENST00000555612 UTP11Q9Y3A2 253 aaKnown RBP9.04□□□□□ -0.96
SYNE2-220ENST00000555612 ATXN8OSP0DMR3 200 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 PFKFB1P16118 471 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 CRKP46108 304 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 SLC12A2P55011 1212 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 CUL4BQ13620 913 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 CCDC105Q8IYK2 499 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 NACC1Q96RE7 527 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 TM6SF1Q9BZW5 370 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 TDRD3Q9H7E2 651 aaKnown RBP9.04□□□□□ -0.96
SYNE2-220ENST00000555612 STK25O00506 426 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 PFKFB2O60825 505 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 USP17L2Q6R6M4 530 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 PEX26Q7Z412 305 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 NME8Q8N427 588 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 NAPGQ99747 312 aaPredicted RBP9.04□□□□□ -0.96
SYNE2-220ENST00000555612 RIPOR2Q9Y4F9 1068 aa9.04□□□□□ -0.96
SYNE2-220ENST00000555612 ATP7BP35670 1465 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 PDE6CP51160 858 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 ZMYM1Q5SVZ6 1142 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 CLEC4GQ6UXB4 293 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 CYP27B1O15528 508 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 N4BP1O75113 896 aaKnown RBP9.03□□□□□ -0.96
SYNE2-220ENST00000555612 GH2P01242 217 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 XPAP23025 273 aaPredicted RBP9.03□□□□□ -0.96
SYNE2-220ENST00000555612 ADD2P35612 726 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 OSTNP61366 133 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 FAM26FQ5R3K3 315 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 TBC1D9BQ66K14 1250 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 ZBTB33Q86T24 672 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 ARHGEF1Q92888 912 aaKnown RBP9.03□□□□□ -0.96
SYNE2-220ENST00000555612 ZKSCAN5Q9Y2L8 839 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 SAMD9LQ8IVG5 1584 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 SOS2Q07890 1332 aaPredicted RBP9.03□□□□□ -0.96
SYNE2-220ENST00000555612 PLA2R1Q13018 1463 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 KCNQ2O43526 872 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 PTGDRQ13258 359 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 ADAM9Q13443 819 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 CEP128Q6ZU80 1094 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 RYBPQ8N488 228 aaPredicted RBP9.03□□□□□ -0.96
SYNE2-220ENST00000555612 CDHR1Q96JP9 859 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 PKNOX2Q96KN3 472 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 SLF1Q9BQI6 1058 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 KMT5AQ9NQR1 393 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 ATG3Q9NT62 314 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 RAB20Q9NX57 234 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 COL15A1P39059 1388 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 TYW5A2RUC4 315 aaKnown RBP9.03□□□□□ -0.96
SYNE2-220ENST00000555612 HOXA13P31271 388 aaPredicted RBP9.03□□□□□ -0.96
SYNE2-220ENST00000555612 CACNB1Q02641 598 aaPredicted RBP9.03□□□□□ -0.96
SYNE2-220ENST00000555612 CDC37Q16543 378 aaPredicted RBP9.03□□□□□ -0.96
SYNE2-220ENST00000555612 CPLX4Q7Z7G2 160 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 ANKS4BQ8N8V4 417 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 TPCN1Q9ULQ1 816 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 TTC37Q6PGP7 1564 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 IFNB1P01574 187 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 ADALQ6DHV7 355 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 GBP6Q6ZN66 633 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 FOXP4Q8IVH2 680 aaPredicted RBP9.03□□□□□ -0.96
SYNE2-220ENST00000555612 SYCE1Q8N0S2 351 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 ANKRD36BP1Q96IX9 119 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 SNX25Q9H3E2 840 aa9.03□□□□□ -0.96
SYNE2-220ENST00000555612 GSPT1P15170 499 aaKnown RBP9.02□□□□□ -0.96
SYNE2-220ENST00000555612 NFX1Q12986 1120 aaKnown RBP9.02□□□□□ -0.96
SYNE2-220ENST00000555612 RASGRF1Q13972 1273 aa9.02□□□□□ -0.96
SYNE2-220ENST00000555612 NKX1-1Q15270 411 aaPredicted RBP9.02□□□□□ -0.96
SYNE2-220ENST00000555612 CCDC110Q8TBZ0 833 aa9.02□□□□□ -0.96
SYNE2-220ENST00000555612 PI4K2BQ8TCG2 481 aa9.02□□□□□ -0.96
SYNE2-220ENST00000555612 RSAD2Q8WXG1 361 aa9.02□□□□□ -0.96
SYNE2-220ENST00000555612 CLIC6Q96NY7 704 aa9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms