RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 USH1GQ495M9 461 aa16■□□□□ 0.15
SHMT2-219ENST00000555563 ANO1Q5XXA6 986 aa16■□□□□ 0.15
SHMT2-219ENST00000555563 MAMDC4Q6UXC1 1216 aa16■□□□□ 0.15
SHMT2-219ENST00000555563 CATIPQ7Z7H3 387 aa16■□□□□ 0.15
SHMT2-219ENST00000555563 CLEC4DQ8WXI8 215 aa16■□□□□ 0.15
SHMT2-219ENST00000555563 PAWRQ96IZ0 340 aaKnown RBP16■□□□□ 0.15
SHMT2-219ENST00000555563 TMEM87BQ96K49 555 aa16■□□□□ 0.15
SHMT2-219ENST00000555563 JMJD4Q9H9V9 463 aa16■□□□□ 0.15
SHMT2-219ENST00000555563 NRBP1Q9UHY1 535 aa16■□□□□ 0.15
SHMT2-219ENST00000555563 CNPY2Q9Y2B0 182 aa16■□□□□ 0.15
SHMT2-219ENST00000555563 ASTN1O14525 1302 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 SOWAHBA6NEL2 793 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 REC8O95072 547 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 SNAI1O95863 264 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-219ENST00000555563 SLC35G1Q2M3R5 365 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 QRICH1Q2TAL8 776 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 ADCK5Q3MIX3 580 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 SLC30A10Q6XR72 485 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 ARMCX2Q7L311 632 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 ZNF654Q8IZM8 581 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 MYL10Q9BUA6 226 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 LRRC2Q9BYS8 371 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-219ENST00000555563 MYH6P13533 1939 aa15.99■□□□□ 0.15
SHMT2-219ENST00000555563 ALPK3Q96L96 1907 aa15.98■□□□□ 0.15
SHMT2-219ENST00000555563 DDAH1O94760 285 aa15.98■□□□□ 0.15
SHMT2-219ENST00000555563 ZNF865P0CJ78 1059 aaPredicted RBP15.98■□□□□ 0.15
SHMT2-219ENST00000555563 TSGA10IPQ3SY00 556 aa15.98■□□□□ 0.15
SHMT2-219ENST00000555563 CCDC144CPQ8IYA2 1237 aa15.98■□□□□ 0.15
SHMT2-219ENST00000555563 NUP133Q8WUM0 1156 aa15.98■□□□□ 0.15
SHMT2-219ENST00000555563 NEK1Q96PY6 1258 aa15.98■□□□□ 0.15
SHMT2-219ENST00000555563 PURBQ96QR8 312 aaKnown RBP15.98■□□□□ 0.15
SHMT2-219ENST00000555563 HTATIP2Q9BUP3 242 aa15.98■□□□□ 0.15
SHMT2-219ENST00000555563 VAT1LQ9HCJ6 419 aa15.98■□□□□ 0.15
SHMT2-219ENST00000555563 ZHX1Q9UKY1 873 aaPredicted RBP15.98■□□□□ 0.15
SHMT2-219ENST00000555563 PTPDC1A2A3K4 754 aa15.97■□□□□ 0.15
SHMT2-219ENST00000555563 HSPA4P34932 840 aa15.97■□□□□ 0.15
SHMT2-219ENST00000555563 LIFRP42702 1097 aa15.97■□□□□ 0.15
SHMT2-219ENST00000555563 BAATQ14032 418 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-219ENST00000555563 KRT32Q14532 448 aa15.97■□□□□ 0.15
SHMT2-219ENST00000555563 NFXL1Q6ZNB6 911 aa15.97■□□□□ 0.15
SHMT2-219ENST00000555563 NECAB2Q7Z6G3 386 aa15.97■□□□□ 0.15
SHMT2-219ENST00000555563 KCNB2Q92953 911 aa15.97■□□□□ 0.15
SHMT2-219ENST00000555563 LENG1Q96BZ8 264 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-219ENST00000555563 MTMR8Q96EF0 704 aa15.97■□□□□ 0.15
SHMT2-219ENST00000555563 TCEANC2Q96MN5 208 aa15.97■□□□□ 0.15
SHMT2-219ENST00000555563 C11orf49Q9H6J7 331 aa15.97■□□□□ 0.15
SHMT2-219ENST00000555563 DDX49Q9Y6V7 483 aaKnown RBP15.97■□□□□ 0.15
SHMT2-219ENST00000555563 ABCB11O95342 1321 aa15.96■□□□□ 0.15
SHMT2-219ENST00000555563 CCDC69A6NI79 296 aa15.96■□□□□ 0.15
SHMT2-219ENST00000555563 CYTH3O43739 400 aa15.96■□□□□ 0.15
SHMT2-219ENST00000555563 PPP1R11O60927 126 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-219ENST00000555563 AKR1A1P14550 325 aa15.96■□□□□ 0.15
SHMT2-219ENST00000555563 FXR1P51114 621 aaKnown RBP eCLIP15.96■□□□□ 0.15
SHMT2-219ENST00000555563 RNF207Q6ZRF8 634 aa15.96■□□□□ 0.15
SHMT2-219ENST00000555563 FBXO11Q86XK2 927 aa15.96■□□□□ 0.15
SHMT2-219ENST00000555563 CTCFLQ8NI51 663 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-219ENST00000555563 KATNBL1Q9H079 304 aa15.96■□□□□ 0.15
SHMT2-219ENST00000555563 COLQQ9Y215 455 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-219ENST00000555563 DNM1LO00429 736 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 ZBTB5O15062 677 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 RARBP10826 455 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 COL6A1P12109 1028 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 RXRAP19793 462 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 CALML3P27482 149 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 RPS6P62753 249 aaKnown RBP15.95■□□□□ 0.14
SHMT2-219ENST00000555563 HOMER1Q86YM7 354 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 RAB11FIP4Q86YS3 637 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 TMTC2Q8N394 836 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 MAP3K14Q99558 947 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 AMNQ9BXJ7 453 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 RIOX1Q9H6W3 641 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 XPNPEP3Q9NQH7 507 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 SNX14Q9Y5W7 946 aa15.95■□□□□ 0.14
SHMT2-219ENST00000555563 ASB14A6NK59 587 aa15.94■□□□□ 0.14
SHMT2-219ENST00000555563 ADCY6O43306 1168 aa15.94■□□□□ 0.14
SHMT2-219ENST00000555563 MYCNP04198 464 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-219ENST00000555563 KIF5BP33176 963 aa15.94■□□□□ 0.14
SHMT2-219ENST00000555563 ALDH5A1P51649 535 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-219ENST00000555563 EXOSC10Q01780 885 aaKnown RBP15.94■□□□□ 0.14
SHMT2-219ENST00000555563 ACVR2BQ13705 512 aa15.94■□□□□ 0.14
SHMT2-219ENST00000555563 GJC2Q5T442 439 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-219ENST00000555563 DHX32Q7L7V1 743 aaKnown RBP15.94■□□□□ 0.14
SHMT2-219ENST00000555563 SGMS1Q86VZ5 419 aa15.94■□□□□ 0.14
SHMT2-219ENST00000555563 MICU3Q86XE3 530 aa15.94■□□□□ 0.14
SHMT2-219ENST00000555563 DPF3Q92784 378 aa15.94■□□□□ 0.14
SHMT2-219ENST00000555563 PIGSQ96S52 555 aa15.94■□□□□ 0.14
SHMT2-219ENST00000555563 ABHD16BQ9H3Z7 469 aa15.94■□□□□ 0.14
SHMT2-219ENST00000555563 ADD3Q9UEY8 706 aaKnown RBP15.94■□□□□ 0.14
SHMT2-219ENST00000555563 FAM184BQ9ULE4 1060 aa15.94■□□□□ 0.14
SHMT2-219ENST00000555563 SLC12A7Q9Y666 1083 aa15.94■□□□□ 0.14
SHMT2-219ENST00000555563 PLEKHA8P1O95397 391 aa15.93■□□□□ 0.14
SHMT2-219ENST00000555563 PGK1P00558 417 aa15.93■□□□□ 0.14
SHMT2-219ENST00000555563 CPA1P15085 419 aa15.93■□□□□ 0.14
SHMT2-219ENST00000555563 LRRC41Q15345 812 aa15.93■□□□□ 0.14
SHMT2-219ENST00000555563 CCDC144BQ3MJ40 725 aa15.93■□□□□ 0.14
SHMT2-219ENST00000555563 FBXO16Q8IX29 292 aaPredicted RBP15.93■□□□□ 0.14
SHMT2-219ENST00000555563 ARRDC4Q8NCT1 418 aa15.93■□□□□ 0.14
SHMT2-219ENST00000555563 RGS22Q8NE09 1264 aa15.93■□□□□ 0.14
SHMT2-219ENST00000555563 MORC4Q8TE76 937 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms