RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 NOL8Q76FK4 1167 aaKnown RBP12.95□□□□□ -0.34
SHMT2-216ENST00000554975 RASEFQ8IZ41 740 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 MICALL1Q8N3F8 863 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 TINF2Q9BSI4 451 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 CABP5Q9NP86 173 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 HELLSQ9NRZ9 838 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 SLC5A4Q9NY91 659 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 HOXC10Q9NYD6 342 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 NRBP1Q9UHY1 535 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 ZDHHC9Q9Y397 364 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 ADCY6O43306 1168 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 STX6O43752 255 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 IGSF3O75054 1194 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 ZSCAN22P10073 491 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-216ENST00000554975 FCER1AP12319 257 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 AKR1A1P14550 325 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 MYOGP15173 224 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 CDK7P50613 346 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 PTH1RQ03431 593 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 GABPAQ06546 454 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 SLC9C2Q5TAH2 1124 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 CAVIN1Q6NZI2 390 aaKnown RBP12.94□□□□□ -0.34
SHMT2-216ENST00000554975 TRIM44Q96DX7 344 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-216ENST00000554975 MMP19Q99542 508 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 TSEN34Q9BSV6 310 aaKnown RBP12.94□□□□□ -0.34
SHMT2-216ENST00000554975 C11orf16Q9NQ32 467 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 PAG1Q9NWQ8 432 aa12.94□□□□□ -0.34
SHMT2-216ENST00000554975 FLOT1O75955 427 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 LETM1O95202 739 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-216ENST00000554975 PDE6AP16499 860 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 RPS6KB1P23443 525 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 CYP2C18P33260 490 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 NASPP49321 788 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-216ENST00000554975 RABGGTBP53611 331 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 PKP1Q13835 747 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 ZSCAN23Q3MJ62 389 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 MCMDC2Q4G0Z9 681 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 SIAH1Q8IUQ4 282 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 SPICE1Q8N0Z3 855 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 MB21D1Q8N884 522 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 FAM227BQ96M60 508 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 DSCC1Q9BVC3 393 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 MSRAQ9UJ68 235 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 HCN4Q9Y3Q4 1203 aa12.93□□□□□ -0.34
SHMT2-216ENST00000554975 ARIH1Q9Y4X5 557 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-216ENST00000554975 COL4A4P53420 1690 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-216ENST00000554975 UMODL1Q5DID0 1318 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 PTPRSQ13332 1948 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 MAGEB6P1A0A0J9YX57 407 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 FAM86C2PA6NEL3 165 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 RFXAPO00287 272 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 MPHOSPH10O00566 681 aaKnown RBP12.92□□□□□ -0.34
SHMT2-216ENST00000554975 PRPF40AO75400 957 aaKnown RBP12.92□□□□□ -0.34
SHMT2-216ENST00000554975 F13A1P00488 732 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 RAB30Q15771 203 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 PSRC1Q6PGN9 363 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-216ENST00000554975 TTC6Q86TZ1 520 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 CERS3Q8IU89 383 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 NUP133Q8WUM0 1156 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 HERVK_113Q902F9 699 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.92□□□□□ -0.341e-6■■□□□ 11.9
SHMT2-216ENST00000554975 FBXO28Q9NVF7 368 aa12.92□□□□□ -0.34
SHMT2-216ENST00000554975 ZNF532Q9HCE3 1301 aa12.91□□□□□ -0.34
SHMT2-216ENST00000554975 MOXD2PA6NHM9 499 aa12.91□□□□□ -0.34
SHMT2-216ENST00000554975 KRT40Q6A162 431 aa12.91□□□□□ -0.34
SHMT2-216ENST00000554975 TMED8Q6PL24 325 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-216ENST00000554975 ALYREFQ86V81 257 aaKnown RBP12.91□□□□□ -0.34
SHMT2-216ENST00000554975 FAM126BQ8IXS8 530 aa12.91□□□□□ -0.34
SHMT2-216ENST00000554975 TMEM199Q8N511 208 aa12.91□□□□□ -0.34
SHMT2-216ENST00000554975 FAM184AQ8NB25 1140 aa12.91□□□□□ -0.34
SHMT2-216ENST00000554975 SLC28A3Q9HAS3 691 aa12.91□□□□□ -0.34
SHMT2-216ENST00000554975 IL23AQ9NPF7 189 aa12.91□□□□□ -0.34
SHMT2-216ENST00000554975 SLC25A27O95847 323 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 SNAI1O95863 264 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-216ENST00000554975 ASGR1P07306 291 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 CYP2D6P10635 497 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 UBE2HP62256 183 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 TMEM31Q5JXX7 168 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 ZSCAN25Q6NSZ9 544 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 LRSAM1Q6UWE0 723 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 OTOP2Q7RTS6 562 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 RIOX2Q8IUF8 465 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 CCDC83Q8IWF9 413 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 TET1Q8NFU7 2136 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 VWCEQ96DN2 955 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 CRNKL1Q9BZJ0 848 aaKnown RBP12.9□□□□□ -0.34
SHMT2-216ENST00000554975 CTNNA3Q9UI47 895 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 ADAMTS5Q9UNA0 930 aa12.9□□□□□ -0.34
SHMT2-216ENST00000554975 DIS3Q9Y2L1 958 aaKnown RBP12.9□□□□□ -0.34
SHMT2-216ENST00000554975 ELP1O95163 1332 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 MROH7Q68CQ1 1323 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 EPOPA6NHQ4 379 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 SMIM22K7EJ46 135 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 ARVCFO00192 962 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 CTAGE5O15320 804 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 TLL1O43897 1013 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 CD4P01730 458 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 C6orf222P0C671 652 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-216ENST00000554975 AKR1B1P15121 316 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 SYT1P21579 422 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms