RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TSEN34Q9BSV6 310 aaKnown RBP18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 SMCHD1A6NHR9 2005 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 PARP1P09874 1014 aaKnown RBP18.76■□□□□ 0.59
CCDC88C-209ENST00000554872 BMP8BP34820 402 aa18.76■□□□□ 0.59
CCDC88C-209ENST00000554872 GJC2Q5T442 439 aaPredicted RBP18.76■□□□□ 0.59
CCDC88C-209ENST00000554872 ANO1Q5XXA6 986 aa18.76■□□□□ 0.59
CCDC88C-209ENST00000554872 CHRDL2Q6WN34 429 aa18.76■□□□□ 0.59
CCDC88C-209ENST00000554872 RALYLQ86SE5 291 aaKnown RBP18.76■□□□□ 0.59
CCDC88C-209ENST00000554872 KLHDC9Q8NEP7 349 aa18.76■□□□□ 0.59
CCDC88C-209ENST00000554872 SENP6Q9GZR1 1112 aaPredicted RBP18.76■□□□□ 0.59
CCDC88C-209ENST00000554872 LSG1Q9H089 658 aaKnown RBP18.76■□□□□ 0.59
CCDC88C-209ENST00000554872 UPF3AQ9H1J1 476 aaKnown RBP18.76■□□□□ 0.59
CCDC88C-209ENST00000554872 RBM8AQ9Y5S9 174 aaKnown RBP18.76■□□□□ 0.59
CCDC88C-209ENST00000554872 SYNRGQ9UMZ2 1314 aa18.75■□□□□ 0.59
CCDC88C-209ENST00000554872 MCM3APO60318 1980 aa18.75■□□□□ 0.59
CCDC88C-209ENST00000554872 NFIBO00712 420 aa18.75■□□□□ 0.59
CCDC88C-209ENST00000554872 KIAA1211Q6ZU35 1233 aa18.75■□□□□ 0.59
CCDC88C-209ENST00000554872 STOX1Q6ZVD7 989 aa18.75■□□□□ 0.59
CCDC88C-209ENST00000554872 GDF15Q99988 308 aa18.75■□□□□ 0.59
CCDC88C-209ENST00000554872 ADD3Q9UEY8 706 aaKnown RBP18.75■□□□□ 0.59
CCDC88C-209ENST00000554872 ZHX1Q9UKY1 873 aaPredicted RBP18.75■□□□□ 0.59
CCDC88C-209ENST00000554872 TAF6LQ9Y6J9 622 aa18.75■□□□□ 0.59
CCDC88C-209ENST00000554872 MOXD2PA6NHM9 499 aa18.74■□□□□ 0.59
CCDC88C-209ENST00000554872 GOLGA8HP0CJ92 632 aa18.74■□□□□ 0.59
CCDC88C-209ENST00000554872 SART3Q15020 963 aaKnown RBP18.74■□□□□ 0.59
CCDC88C-209ENST00000554872 CCDC144BQ3MJ40 725 aa18.74■□□□□ 0.59
CCDC88C-209ENST00000554872 CCSAPQ6IQ19 270 aaPredicted RBP18.74■□□□□ 0.59
CCDC88C-209ENST00000554872 NSMFQ6X4W1 530 aa18.74■□□□□ 0.59
CCDC88C-209ENST00000554872 MB21D2Q8IYB1 491 aaPredicted RBP18.74■□□□□ 0.59
CCDC88C-209ENST00000554872 ADGRF4Q8IZF3 695 aa18.74■□□□□ 0.59
CCDC88C-209ENST00000554872 MTMR8Q96EF0 704 aa18.74■□□□□ 0.59
CCDC88C-209ENST00000554872 RBM27Q9P2N5 1060 aaKnown RBP18.74■□□□□ 0.59
CCDC88C-209ENST00000554872 TRIOBPQ9H2D6 2365 aa18.74■□□□□ 0.59
CCDC88C-209ENST00000554872 PALM3A6NDB9 673 aaPredicted RBP18.73■□□□□ 0.59
CCDC88C-209ENST00000554872 PGK1P00558 417 aa18.73■□□□□ 0.59
CCDC88C-209ENST00000554872 GJA9P57773 515 aa18.73■□□□□ 0.59
CCDC88C-209ENST00000554872 BAATQ14032 418 aaPredicted RBP18.73■□□□□ 0.59
CCDC88C-209ENST00000554872 CDC37Q16543 378 aaPredicted RBP18.73■□□□□ 0.59
CCDC88C-209ENST00000554872 SLC39A5Q6ZMH5 540 aa18.73■□□□□ 0.59
CCDC88C-209ENST00000554872 DNERQ8NFT8 737 aa18.73■□□□□ 0.59
CCDC88C-209ENST00000554872 UBA5Q9GZZ9 404 aa18.73■□□□□ 0.59
CCDC88C-209ENST00000554872 VTA1Q9NP79 307 aa18.73■□□□□ 0.59
CCDC88C-209ENST00000554872 ABCB11O95342 1321 aa18.73■□□□□ 0.59
CCDC88C-209ENST00000554872 ERICH2A1L162 156 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 IFIT3O14879 490 aaKnown RBP18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 ADCY6O43306 1168 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 EDNRBP24530 442 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 ADCYAP1R1P41586 468 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 ALDH5A1P51649 535 aaPredicted RBP18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 ANTXR2P58335 489 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 GHRHRQ02643 423 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 NECTIN1Q15223 517 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 RNF207Q6ZRF8 634 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 MAP3K14Q99558 947 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 JMJD4Q9H9V9 463 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 MAD2L2Q9UI95 211 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 Q9Y3F1 56 aa18.72■□□□□ 0.59
CCDC88C-209ENST00000554872 FXR1P51114 621 aaKnown RBP eCLIP18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 RTP1P59025 263 aa18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 RPS6P62753 249 aaKnown RBP18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 TROAPQ12815 778 aa18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 GRM4Q14833 912 aa18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 WTAPQ15007 396 aa18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 IQSEC1Q6DN90 963 aa18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 SLC30A10Q6XR72 485 aa18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 PCSK9Q8NBP7 692 aaKnown RBP18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 IGDCC4Q8TDY8 1250 aa18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 LENG1Q96BZ8 264 aaPredicted RBP18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 CCDC136Q96JN2 1154 aa18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 SPC25Q9HBM1 224 aa18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 GNEQ9Y223 722 aaKnown RBP18.71■□□□□ 0.59
CCDC88C-209ENST00000554872 A0A1W2PQ45 241 aaPredicted RBP18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 A0A1W2PQY0 241 aa18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 PTPDC1A2A3K4 754 aa18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 KLRF2D3W0D1 207 aa18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 SLC27A2O14975 620 aa18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 ACLYP53396 1101 aa18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 QRICH1Q2TAL8 776 aa18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 TAPT1Q6NXT6 567 aa18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 STAG2Q8N3U4 1231 aa18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 NUP133Q8WUM0 1156 aa18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 MPHOSPH6Q99547 160 aaKnown RBP18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 CPVLQ9H3G5 476 aa18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 ZMYND8Q9ULU4 1186 aaPredicted RBP18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 ELP1O95163 1332 aa18.7■□□□□ 0.58
CCDC88C-209ENST00000554872 RBM47A0AV96 593 aaKnown RBP18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 CTAGE5O15320 804 aa18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 CDC45O75419 566 aa18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 MAGEA10P43363 369 aaPredicted RBP18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 ATN1P54259 1190 aaPredicted RBP18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 TNFAIP2Q03169 654 aa18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 TRAF1Q13077 416 aa18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 CASC1Q6TDU7 716 aa18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 FBXO11Q86XK2 927 aa18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 MCF2L2Q86YR7 1114 aa18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 SAMD3Q8N6K7 520 aa18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 TMEM87BQ96K49 555 aa18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 RIOX1Q9H6W3 641 aa18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 MRPL11Q9Y3B7 192 aaKnown RBP18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 LAMA3Q16787 3333 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms